Variant report

Variant	rs11080638
Chromosome Location	chr18:13259893-13259894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11080639	0.93[EUR][1000 genomes]
rs11661574	0.92[EUR][1000 genomes]
rs11661590	0.92[EUR][1000 genomes]
rs4796974	0.81[EUR][1000 genomes]
rs9951177	0.94[EUR][1000 genomes]
rs9965848	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13233000-13260200	Weak transcription	Colonic Mucosa	Colon
2	chr18:13243200-13260200	Weak transcription	Aorta	Aorta
3	chr18:13243600-13278200	Weak transcription	Dnd41	blood
4	chr18:13253000-13267800	Weak transcription	Gastric	stomach
5	chr18:13253200-13260000	Weak transcription	Brain Angular Gyrus	brain
6	chr18:13254200-13260200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:13256200-13262400	Enhancers	Brain Anterior Caudate	brain
8	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:13258600-13262200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr18:13258600-13262400	Enhancers	Fetal Heart	heart
11	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
12	chr18:13258800-13260400	Enhancers	HUVEC	blood vessel
13	chr18:13258800-13260800	Enhancers	Adipose Nuclei	Adipose
14	chr18:13258800-13261200	Enhancers	Psoas Muscle	Psoas
15	chr18:13258800-13261800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr18:13258800-13262000	Enhancers	Brain Cingulate Gyrus	brain
17	chr18:13258800-13262000	Enhancers	Fetal Muscle Leg	muscle
18	chr18:13258800-13262200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr18:13258800-13262200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr18:13258800-13262200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr18:13258800-13262200	Enhancers	Left Ventricle	heart
22	chr18:13258800-13262400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr18:13258800-13262400	Enhancers	Colon Smooth Muscle	Colon
24	chr18:13258800-13262400	Enhancers	Fetal Lung	lung
25	chr18:13258800-13262400	Enhancers	Placenta	Placenta
26	chr18:13258800-13262400	Enhancers	Spleen	Spleen
27	chr18:13258800-13262400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr18:13259000-13260200	Enhancers	Stomach Smooth Muscle	stomach
29	chr18:13259000-13260400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr18:13259000-13260800	Enhancers	Liver	Liver
31	chr18:13259000-13261600	Genic enhancers	Thymus	Thymus
32	chr18:13259000-13261800	Enhancers	Primary T cells from cord blood	blood
33	chr18:13259000-13262000	Enhancers	Fetal Stomach	stomach
34	chr18:13259000-13262200	Enhancers	Brain Hippocampus Middle	brain
35	chr18:13259000-13262200	Enhancers	Right Atrium	heart
36	chr18:13259200-13261200	Enhancers	Fetal Thymus	thymus
37	chr18:13259200-13262000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr18:13259200-13262600	Enhancers	Lung	lung
39	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr18:13259400-13260600	Weak transcription	Fetal Kidney	kidney
41	chr18:13259400-13261800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr18:13259600-13260600	Enhancers	Fetal Brain Female	brain
43	chr18:13259600-13261200	Enhancers	Pancreas	Pancrea
44	chr18:13259600-13262200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr18:13259800-13260000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr18:13259800-13260000	Enhancers	Small Intestine	intestine
47	chr18:13259800-13260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr18:13259800-13260400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr18:13259800-13261200	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr18:13259800-13261200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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