Variant report
| Variant | rs9966437 |
|---|---|
| Chromosome Location | chr18:40470249-40470250 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:40470184..40470769-chr18:40528826..40529795,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10502804 | 0.95[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1113189 | 1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12454579 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12455240 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12606847 | 0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12606859 | 0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16976999 | 0.95[JPT][hapmap];0.91[YRI][hapmap] |
| rs16977063 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16977065 | 0.82[CHB][hapmap] |
| rs16977068 | 0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1943944 | 0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1944417 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57372542 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv2269 | chr18:40430930-40475718 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv909574 | chr18:40440609-40488279 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv909575 | chr18:40440609-40493500 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv470418 | chr18:40466757-40493501 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv576765 | chr18:40466757-40545122 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
