Variant report

Variant	rs997374
Chromosome Location	chr6:151105281-151105282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12663819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12664858	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs13196740	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs13201828	0.86[ASN][1000 genomes]
rs13201855	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs13205966	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13211049	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs13211397	0.86[ASN][1000 genomes]
rs13211603	0.86[ASN][1000 genomes]
rs13216327	0.86[ASN][1000 genomes]
rs17080241	0.81[JPT][hapmap]
rs17340521	0.81[JPT][hapmap]
rs36054564	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4645433	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs57798861	0.86[ASN][1000 genomes]
rs742636	1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7453338	0.86[ASN][1000 genomes]
rs7757414	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7774822	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9478809	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
6	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
8	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:151097400-151108400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:151097400-151108400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:151097400-151109200	Weak transcription	Fetal Brain Female	brain
12	chr6:151097400-151109600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:151097600-151134800	Weak transcription	HUVEC	blood vessel
14	chr6:151098400-151108800	Weak transcription	Fetal Kidney	kidney
15	chr6:151098400-151109600	Weak transcription	Esophagus	oesophagus
16	chr6:151098400-151130400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:151098800-151108400	Weak transcription	Liver	Liver
18	chr6:151098800-151108600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:151098800-151130000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:151099200-151108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:151099200-151108600	Weak transcription	Fetal Stomach	stomach
22	chr6:151099200-151109800	Weak transcription	Aorta	Aorta
23	chr6:151099200-151111800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:151099200-151116400	Weak transcription	Lung	lung
25	chr6:151099400-151108800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:151100200-151108400	Weak transcription	Spleen	Spleen
27	chr6:151100400-151108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:151100400-151108800	Weak transcription	Placenta	Placenta
29	chr6:151100800-151108600	Weak transcription	Thymus	Thymus
30	chr6:151103400-151111800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:151103400-151114800	Strong transcription	Primary B cells from cord blood	blood
32	chr6:151103600-151113000	Strong transcription	Fetal Thymus	thymus
33	chr6:151104000-151115600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:151104200-151105800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:151105000-151105400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:151105200-151105600	ZNF genes & repeats	Fetal Muscle Leg	muscle
37	chr6:151105200-151105600	ZNF genes & repeats	Left Ventricle	heart

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