Variant report

Variant	rs9977516
Chromosome Location	chr21:17486702-17486703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10222050	1.00[AMR][1000 genomes]
rs11910299	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377054	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28522854	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60304664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9305761	1.00[AMR][1000 genomes]
rs9976959	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9977629	1.00[AMR][1000 genomes]
rs9978009	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9979113	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9981610	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9982445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9982669	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9982772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9984126	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9984888	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851038	chr21:17412144-17488119	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17485800-17488200	Weak transcription	NH-A	brain
2	chr21:17485800-17488400	Weak transcription	Osteobl	bone
3	chr21:17485800-17489600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr21:17486000-17486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr21:17486000-17487600	Weak transcription	NHDF-Ad	bronchial
6	chr21:17486000-17488200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr21:17486000-17488600	Weak transcription	A549	lung
8	chr21:17486000-17489200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links