Variant report

Variant	rs9977796
Chromosome Location	chr21:16868783-16868784
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28707730	1.00[AMR][1000 genomes]
rs9976830	1.00[AMR][1000 genomes]
rs9980374	0.84[ASW][hapmap]
rs9981081	0.84[ASW][hapmap]
rs9983231	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9983441	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs9984071	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv524022	chr21:16865946-16874741	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16868000-16869600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:16868000-16869800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr21:16868200-16868800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr21:16868200-16868800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr21:16868200-16868800	Enhancers	HUVEC	blood vessel
6	chr21:16868200-16869000	Enhancers	NHEK	skin
7	chr21:16868400-16868800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr21:16868400-16868800	Enhancers	HMEC	breast
9	chr21:16868400-16869600	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links