Variant report

Variant	rs9981081
Chromosome Location	chr21:16868503-16868504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr21:16868370-16868724	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr21:16868275-16868754	HUVEC	blood vessel:	n/a	chr21:16868522-16868533
3	JUND	chr21:16868372-16868660	H1-hESC	embryonic stem cell:	n/a	chr21:16868522-16868533
4	MYC	chr21:16868390-16868726	MCF10A-Er-Src	breast:	n/a	n/a
5	JUN	chr21:16868402-16868621	HepG2	liver:	n/a	n/a
6	RCOR1	chr21:16868430-16868666	Hela-S3	cervix:	n/a	n/a
7	RAD21	chr21:16868493-16868755	HepG2	liver:	n/a	n/a
8	SMC3	chr21:16868276-16868728	Hela-S3	cervix:	n/a	n/a
9	STAT3	chr21:16868409-16868517	Hela-S3	cervix:	n/a	n/a
10	FOS	chr21:16868288-16868719	MCF10A-Er-Src	breast:	n/a	chr21:16868522-16868533
11	FOS	chr21:16868345-16868687	MCF10A-Er-Src	breast:	n/a	chr21:16868522-16868533
12	FOSL2	chr21:16868275-16868617	HepG2	liver:	n/a	n/a
13	FOSL2	chr21:16868307-16868728	HepG2	liver:	n/a	n/a
14	JUND	chr21:16868341-16868703	Hela-S3	cervix:	n/a	chr21:16868522-16868533
15	CTCF	chr21:16868500-16868650	A549	lung:	n/a	n/a
16	CTCF	chr21:16868500-16868650	BE2_C	brain:	n/a	n/a
17	STAT3	chr21:16868372-16868708	MCF10A-Er-Src	breast:	n/a	n/a
18	E2F4	chr21:16868404-16868552	MCF10A-Er-Src	breast:	n/a	n/a
19	CTCF	chr21:16868480-16868630	HMEC	breast:	n/a	n/a
20	STAT3	chr21:16868355-16868744	MCF10A-Er-Src	breast:	n/a	n/a
21	JUND	chr21:16868338-16868698	HepG2	liver:	n/a	chr21:16868522-16868533
22	GATA2	chr21:16868225-16869124	HUVEC	blood vessel:	n/a	n/a
23	JUN	chr21:16868342-16868691	HUVEC	blood vessel:	n/a	n/a
24	CTCF	chr21:16868480-16868630	NHEK	skin:	n/a	n/a
25	MYC	chr21:16868382-16868658	MCF10A-Er-Src	breast:	n/a	n/a
26	RAD21	chr21:16868443-16868813	H1-hESC	embryonic stem cell:	n/a	n/a
27	RAD21	chr21:16868422-16868796	Hela-S3	cervix:	n/a	n/a
28	RAD21	chr21:16868442-16868884	H1-hESC	embryonic stem cell:	n/a	n/a
29	FOS	chr21:16868326-16868923	MCF10A-Er-Src	breast:	n/a	chr21:16868522-16868533
30	FOS	chr21:16868310-16868710	MCF10A-Er-Src	breast:	n/a	chr21:16868522-16868533

Variant related genes	Relation type
ENSG00000224247	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9977796	0.84[ASW][hapmap]
rs9983441	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv524022	chr21:16865946-16874741	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16868000-16868600	Enhancers	Placenta	Placenta
2	chr21:16868000-16869600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr21:16868000-16869800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr21:16868200-16868800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr21:16868200-16868800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr21:16868200-16868800	Enhancers	HUVEC	blood vessel
7	chr21:16868200-16869000	Enhancers	NHEK	skin
8	chr21:16868400-16868600	Enhancers	Aorta	Aorta
9	chr21:16868400-16868800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr21:16868400-16868800	Enhancers	HMEC	breast
11	chr21:16868400-16869600	Enhancers	Primary neutrophils fromperipheralblood	blood

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