Variant report

Variant	rs9978892
Chromosome Location	chr21:15759705-15759706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr21:15759442-15759788	MCF10A-Er-Src	breast:	n/a	n/a
2	TAL1	chr21:15759658-15759865	K562	blood:	n/a	n/a
3	FOXA1	chr21:15759389-15759734	HepG2	liver:	n/a	n/a
4	CUX1	chr21:15759540-15759791	K562	blood:	n/a	chr21:15759778-15759787

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15759229..15762199-chr21:15825176..15826732,2	K562	blood:

Variant related genes	Relation type
HSPA13	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12106397	1.00[AMR][1000 genomes]
rs12329678	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12329818	1.00[EUR][1000 genomes]
rs1475892	1.00[EUR][1000 genomes]
rs28470776	1.00[AMR][1000 genomes]
rs28579323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58041958	1.00[EUR][1000 genomes]
rs59704604	1.00[EUR][1000 genomes]
rs6516815	1.00[EUR][1000 genomes]
rs7275979	1.00[EUR][1000 genomes]
rs7279926	1.00[EUR][1000 genomes]
rs7282081	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8130177	1.00[EUR][1000 genomes]
rs8130525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8132024	1.00[EUR][1000 genomes]
rs9305297	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9305311	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9974277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9975031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9976092	1.00[EUR][1000 genomes]
rs9976969	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977174	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9978061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9978939	1.00[YRI][hapmap]
rs9980948	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9981182	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9981787	1.00[EUR][1000 genomes]
rs9982477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9982509	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9982684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9982971	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9983264	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064554	chr21:15676222-15809321	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1061686	chr21:15724570-15765777	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv913403	chr21:15743387-15786271	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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