Variant report
| Variant | rs9982509 |
|---|---|
| Chromosome Location | chr21:15785221-15785222 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12329678 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12329818 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28579323 | 1.00[EUR][1000 genomes] |
| rs58041958 | 1.00[EUR][1000 genomes] |
| rs59704604 | 1.00[EUR][1000 genomes] |
| rs6516815 | 1.00[EUR][1000 genomes] |
| rs7279926 | 1.00[EUR][1000 genomes] |
| rs7282081 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7364095 | 1.00[MEX][hapmap] |
| rs8130177 | 1.00[EUR][1000 genomes] |
| rs8130525 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8132024 | 1.00[EUR][1000 genomes] |
| rs8132338 | 1.00[MEX][hapmap] |
| rs9305297 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9305311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9974277 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9975031 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9976092 | 1.00[EUR][1000 genomes] |
| rs9976969 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9977174 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9978061 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9978892 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9980948 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9981182 | 1.00[EUR][1000 genomes] |
| rs9981787 | 1.00[EUR][1000 genomes] |
| rs9982477 | 1.00[EUR][1000 genomes] |
| rs9982684 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9982971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064554 | chr21:15676222-15809321 | Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv913403 | chr21:15743387-15786271 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1063703 | chr21:15777995-15882121 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv544375 | chr21:15777995-15882121 | Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:15785200-15785400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
