Variant report

Variant	rs9980063
Chromosome Location	chr21:45588394-45588395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:45573470..45576200-chr21:45587990..45590480,2	MCF-7	breast:
2	chr21:45586912..45588544-chr21:45664966..45667379,2	K562	blood:
3	chr21:45581288..45584070-chr21:45586807..45588482,3	MCF-7	breast:
4	chr21:45585072..45590786-chr21:45590904..45593996,5	K562	blood:
5	chr21:45563215..45565745-chr21:45586840..45589212,2	K562	blood:
6	chr21:45571920..45573873-chr21:45586886..45589109,2	MCF-7	breast:
7	chr21:45586838..45589344-chr21:45614842..45616536,2	MCF-7	breast:
8	chr21:45567167..45569134-chr21:45587063..45589096,2	MCF-7	breast:
9	chr21:45585260..45589365-chr21:45591122..45593213,3	K562	blood:
10	chr21:45579145..45582773-chr21:45583367..45588421,9	K562	blood:
11	chr21:45564255..45569334-chr21:45585754..45591354,8	K562	blood:
12	chr21:45580740..45582853-chr21:45588250..45590805,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267913	Chromatin interaction
ENSG00000225331	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1005045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11910604	1.00[JPT][hapmap]
rs2020943	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2071144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2227265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838465	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2838470	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs2838479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838484	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2838487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2838510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59514931	0.84[EUR][1000 genomes]
rs60444278	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60750077	0.84[EUR][1000 genomes]
rs62228168	0.84[EUR][1000 genomes]
rs62228169	0.84[EUR][1000 genomes]
rs62228172	0.84[EUR][1000 genomes]
rs62228173	0.84[EUR][1000 genomes]
rs8128926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs878132	1.00[JPT][hapmap]
rs9284512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9978109	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9978772	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs9979931	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9982695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv913887	chr21:45344799-45670770	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1064420	chr21:45460089-45814986	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv544472	chr21:45460089-45814986	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv432155	chr21:45479055-45772388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv913890	chr21:45482950-45603746	Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv459294	chr21:45499171-45595060	Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv587722	chr21:45499171-45595060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv913891	chr21:45508561-45588518	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv913892	chr21:45508561-45595060	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv913893	chr21:45508561-45603746	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv913894	chr21:45508561-45627976	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv913895	chr21:45528919-45595060	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	nsv913896	chr21:45528919-45603746	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
15	nsv913897	chr21:45528919-45640139	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
16	esv1825445	chr21:45535566-45754936	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
17	esv1817474	chr21:45540607-45773102	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
18	nsv533679	chr21:45551026-45768578	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
19	nsv913898	chr21:45555079-45941566	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
20	nsv428042	chr21:45560437-45848190	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
21	nsv1065479	chr21:45571324-45617878	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv913899	chr21:45577102-45611950	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv913900	chr21:45577102-45640139	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45575400-45592000	Weak transcription	Fetal Brain Female	brain
2	chr21:45579800-45590400	Weak transcription	Colon Smooth Muscle	Colon
3	chr21:45579800-45590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr21:45580000-45591200	Weak transcription	Fetal Heart	heart
5	chr21:45580800-45589200	Weak transcription	Colonic Mucosa	Colon
6	chr21:45581000-45590400	Weak transcription	Pancreas	Pancrea
7	chr21:45581000-45591600	Weak transcription	Right Atrium	heart
8	chr21:45581200-45589000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr21:45584200-45598800	Weak transcription	Ovary	ovary
10	chr21:45584600-45590200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr21:45584800-45588400	Enhancers	Primary B cells from cord blood	blood
12	chr21:45584800-45589200	Weak transcription	Fetal Intestine Small	intestine
13	chr21:45585800-45588400	Enhancers	Primary T cells from cord blood	blood
14	chr21:45586400-45589600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr21:45586400-45592400	Weak transcription	HUVEC	blood vessel
16	chr21:45586600-45589400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr21:45586800-45589000	Weak transcription	Gastric	stomach
18	chr21:45586800-45589600	Weak transcription	Liver	Liver
19	chr21:45586800-45590400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr21:45586800-45592200	Weak transcription	Brain Angular Gyrus	brain
21	chr21:45587200-45590600	Weak transcription	Right Ventricle	heart
22	chr21:45587200-45591600	Weak transcription	Brain Anterior Caudate	brain
23	chr21:45587200-45591600	Weak transcription	Brain Hippocampus Middle	brain
24	chr21:45587200-45592200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr21:45587200-45592200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr21:45587400-45589400	Weak transcription	Stomach Mucosa	stomach
27	chr21:45587400-45590000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr21:45587400-45592400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr21:45587600-45588400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr21:45587600-45588600	Enhancers	Primary B cells from peripheral blood	blood
31	chr21:45587600-45589600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr21:45587600-45589600	Weak transcription	Spleen	Spleen
33	chr21:45587600-45590000	Weak transcription	GM12878-XiMat	blood
34	chr21:45587600-45590200	Weak transcription	Lung	lung
35	chr21:45587600-45590600	Weak transcription	Adipose Nuclei	Adipose
36	chr21:45587600-45591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr21:45587600-45591200	Weak transcription	Fetal Muscle Leg	muscle
38	chr21:45587600-45592200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr21:45587600-45592200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr21:45587600-45592200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr21:45587600-45592400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr21:45587600-45596200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr21:45587800-45588400	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr21:45587800-45590600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr21:45587800-45590800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr21:45587800-45590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr21:45587800-45592000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr21:45587800-45592400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr21:45588000-45588400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr21:45588000-45588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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