The 2.0 version of rSNPBase

Variant report

Variant rs9980591
Chromosome Location chr21:17255497-17255498
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:17223000-17257200 Weak transcription NHLF lung
2 chr21:17223600-17264400 Weak transcription NHEK skin
3 chr21:17228200-17256800 Weak transcription Small Intestine intestine
4 chr21:17233400-17256600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
5 chr21:17235200-17255600 Strong transcription Primary monocytes fromperipheralblood blood
6 chr21:17245400-17255600 Strong transcription Primary T helper naive cells fromperipheralblood blood
7 chr21:17245400-17270400 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr21:17245800-17257600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr21:17246200-17256600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr21:17246200-17261600 Weak transcription Right Ventricle heart
11 chr21:17246400-17263400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr21:17248200-17262400 Weak transcription Pancreas Pancrea
13 chr21:17251400-17256800 Weak transcription K562 blood
14 chr21:17251400-17259000 Weak transcription NHDF-Ad bronchial
15 chr21:17252200-17264600 Weak transcription Hela-S3 cervix
16 chr21:17252600-17256200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr21:17252600-17256800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
18 chr21:17252800-17255800 Strong transcription Fetal Thymus thymus
19 chr21:17252800-17256200 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
20 chr21:17252800-17256600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr21:17253000-17256800 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr21:17253000-17259200 Weak transcription Aorta Aorta
23 chr21:17253000-17263400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr21:17253000-17268200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr21:17253200-17256800 Weak transcription Lung lung
26 chr21:17253200-17256800 Weak transcription Spleen Spleen
27 chr21:17253200-17257200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr21:17253200-17258000 Weak transcription Esophagus oesophagus
29 chr21:17253200-17258000 Weak transcription Thymus Thymus
30 chr21:17253200-17258000 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr21:17253200-17258200 Weak transcription NH-A brain
32 chr21:17253200-17259000 Weak transcription H1 Cell Line embryonic stem cell
33 chr21:17253200-17259400 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr21:17253200-17260400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr21:17253200-17263400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr21:17253200-17264600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr21:17253200-17268000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr21:17253200-17268000 Weak transcription Left Ventricle heart
39 chr21:17253200-17269000 Weak transcription Psoas Muscle Psoas
40 chr21:17253400-17255800 Weak transcription HSMMtube muscle
41 chr21:17253400-17257000 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr21:17253400-17257000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr21:17253400-17257000 Weak transcription Fetal Brain Male brain
44 chr21:17253400-17258000 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr21:17253400-17259800 Weak transcription HSMM muscle
46 chr21:17253400-17261600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr21:17253400-17267800 Weak transcription Stomach Smooth Muscle stomach
48 chr21:17253400-17269400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr21:17253600-17256800 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr21:17253600-17267200 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015