Variant report

Variant	rs9975374
Chromosome Location	chr21:17302313-17302314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11909169	0.83[AMR][1000 genomes]
rs11909481	1.00[TSI][hapmap]
rs11909953	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17241402	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs17307156	0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2183553	0.90[ASN][1000 genomes]
rs2823464	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2823477	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2823479	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2823480	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2823487	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2823488	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28484960	0.91[ASN][1000 genomes]
rs28553297	0.91[ASN][1000 genomes]
rs55804442	0.82[ASN][1000 genomes]
rs56159310	1.00[EUR][1000 genomes]
rs60174740	0.82[ASN][1000 genomes]
rs6517612	0.92[CHB][hapmap];0.81[CHD][hapmap]
rs73348818	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73355450	0.83[AMR][1000 genomes]
rs73892561	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73892565	1.00[EUR][1000 genomes]
rs8130607	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs8132336	0.83[AMR][1000 genomes]
rs8132755	0.91[ASN][1000 genomes]
rs8134111	0.83[AMR][1000 genomes]
rs8134253	0.83[AMR][1000 genomes]
rs926612	1.00[JPT][hapmap]
rs9305754	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9653667	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977019	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9980591	0.91[ASN][1000 genomes]
rs9981877	0.83[AMR][1000 genomes]
rs9982630	0.91[ASN][1000 genomes]
rs9984651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9985029	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17300600-17302400	Enhancers	HSMMtube	muscle
2	chr21:17300600-17305800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr21:17300800-17303400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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