Variant report

Variant	rs56159310
Chromosome Location	chr21:17264425-17264426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17203327..17205670-chr21:17262787..17265674,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP25-1	chr21:17256944-17267308	NONHSAT081216

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56292282	1.00[AMR][1000 genomes]
rs57732471	1.00[AMR][1000 genomes]
rs59764941	1.00[AMR][1000 genomes]
rs73348818	1.00[EUR][1000 genomes]
rs73892523	1.00[AMR][1000 genomes]
rs73892534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892535	1.00[AMR][1000 genomes]
rs73892537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892547	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892551	1.00[AMR][1000 genomes]
rs73892557	1.00[AMR][1000 genomes]
rs73892558	1.00[AMR][1000 genomes]
rs73892561	1.00[EUR][1000 genomes]
rs73892565	1.00[EUR][1000 genomes]
rs9653667	1.00[EUR][1000 genomes]
rs9975374	1.00[EUR][1000 genomes]
rs9984651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17245400-17270400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:17252200-17264600	Weak transcription	Hela-S3	cervix
3	chr21:17253000-17268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:17253200-17264600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:17253200-17268000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr21:17253200-17268000	Weak transcription	Left Ventricle	heart
7	chr21:17253200-17269000	Weak transcription	Psoas Muscle	Psoas
8	chr21:17253400-17267800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr21:17253400-17269400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:17253600-17267200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr21:17255400-17267200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr21:17255400-17267400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr21:17255400-17269600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr21:17255600-17267200	Weak transcription	Fetal Lung	lung
15	chr21:17255800-17268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr21:17255800-17268000	Weak transcription	Ovary	ovary
17	chr21:17256400-17267200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr21:17256600-17267200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr21:17256600-17267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr21:17256600-17270400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr21:17256800-17268400	Weak transcription	A549	lung
22	chr21:17257000-17267800	Weak transcription	Adipose Nuclei	Adipose
23	chr21:17257400-17267600	Weak transcription	HSMMtube	muscle
24	chr21:17261400-17271800	Weak transcription	HSMM	muscle

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