Variant report

Variant	rs73892535
Chromosome Location	chr21:17153961-17153962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17150245..17152126-chr21:17152433..17154723,2	MCF-7	breast:
2	chr21:17101539..17104052-chr21:17152849..17155117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56159310	1.00[AMR][1000 genomes]
rs56292282	1.00[AMR][1000 genomes]
rs57732471	1.00[AMR][1000 genomes]
rs59764941	1.00[AMR][1000 genomes]
rs73892523	1.00[AMR][1000 genomes]
rs73892534	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892551	1.00[AMR][1000 genomes]
rs73892557	1.00[AMR][1000 genomes]
rs73892558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17130800-17156800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:17134200-17154000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:17140800-17154200	Weak transcription	Stomach Mucosa	stomach
4	chr21:17142600-17154000	Weak transcription	Brain Hippocampus Middle	brain
5	chr21:17145800-17154000	Weak transcription	Gastric	stomach
6	chr21:17145800-17156400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr21:17145800-17166600	Weak transcription	Psoas Muscle	Psoas
8	chr21:17148000-17154200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr21:17148000-17160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr21:17148400-17154000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr21:17148400-17154400	Weak transcription	HepG2	liver
12	chr21:17148600-17154000	Weak transcription	Colon Smooth Muscle	Colon
13	chr21:17148800-17154600	Weak transcription	NHDF-Ad	bronchial
14	chr21:17149400-17154000	Weak transcription	HMEC	breast
15	chr21:17150200-17154800	Weak transcription	Fetal Heart	heart
16	chr21:17151400-17154000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr21:17151600-17160600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr21:17151800-17191000	Weak transcription	NH-A	brain
19	chr21:17152000-17154000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr21:17152000-17154000	Weak transcription	Fetal Brain Male	brain
21	chr21:17152200-17154200	Strong transcription	Dnd41	blood
22	chr21:17152200-17155600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr21:17152200-17156400	Weak transcription	Brain Substantia Nigra	brain
24	chr21:17152400-17154200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr21:17152400-17155200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr21:17152400-17155400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr21:17152600-17154400	Strong transcription	Primary T cells from cord blood	blood
28	chr21:17152600-17155000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr21:17152600-17155000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr21:17152800-17154000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr21:17152800-17154200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr21:17152800-17154400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr21:17152800-17154400	Strong transcription	Fetal Intestine Large	intestine
34	chr21:17152800-17154800	Strong transcription	Primary B cells from cord blood	blood
35	chr21:17152800-17155000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr21:17152800-17155200	Strong transcription	Hela-S3	cervix
37	chr21:17152800-17155400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr21:17152800-17155600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr21:17152800-17155600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr21:17152800-17155800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr21:17152800-17155800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr21:17152800-17155800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr21:17152800-17155800	Strong transcription	A549	lung
44	chr21:17152800-17155800	Strong transcription	HSMM	muscle
45	chr21:17153000-17154000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr21:17153000-17154000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr21:17153000-17154400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr21:17153000-17154400	Strong transcription	Fetal Muscle Leg	muscle
49	chr21:17153000-17154600	Strong transcription	Fetal Thymus	thymus
50	chr21:17153000-17154600	Strong transcription	K562	blood

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