Variant report

Variant	rs73892545
Chromosome Location	chr21:17191241-17191242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17101749..17103791-chr21:17190119..17192842,2	K562	blood:
2	chr21:17101664..17103865-chr21:17188990..17191292,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12106392	1.00[EUR][1000 genomes]
rs12106393	1.00[EUR][1000 genomes]
rs56159310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56292282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57732471	1.00[AMR][1000 genomes]
rs59764941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73355468	1.00[EUR][1000 genomes]
rs73892523	1.00[AMR][1000 genomes]
rs73892534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892535	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892541	1.00[EUR][1000 genomes]
rs73892542	1.00[EUR][1000 genomes]
rs73892547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892552	1.00[EUR][1000 genomes]
rs73892554	1.00[EUR][1000 genomes]
rs73892557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892558	1.00[AMR][1000 genomes]
rs8134308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17155200-17197600	Weak transcription	Fetal Heart	heart
2	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
3	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
4	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
6	chr21:17169000-17194200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr21:17174400-17193000	Weak transcription	NHEK	skin
8	chr21:17176000-17198200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr21:17177200-17208800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr21:17178400-17248200	Weak transcription	Esophagus	oesophagus
11	chr21:17178400-17252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr21:17178800-17211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr21:17179800-17192400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr21:17180400-17193000	Weak transcription	NHDF-Ad	bronchial
15	chr21:17180800-17199200	Weak transcription	HSMMtube	muscle
16	chr21:17182400-17227800	Weak transcription	Psoas Muscle	Psoas
17	chr21:17183400-17192600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr21:17183400-17192800	Weak transcription	Osteobl	bone
19	chr21:17184000-17203800	Weak transcription	Brain Hippocampus Middle	brain
20	chr21:17184000-17209800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr21:17184600-17192200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr21:17185800-17194200	Weak transcription	Hela-S3	cervix
23	chr21:17186200-17204200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr21:17187000-17194000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr21:17187200-17192000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr21:17187200-17192000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr21:17187400-17192600	Strong transcription	Adipose Nuclei	Adipose
28	chr21:17187400-17192600	Strong transcription	Placenta	Placenta
29	chr21:17187400-17208800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr21:17187600-17191800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr21:17187600-17192000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr21:17187600-17192200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr21:17187600-17192400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr21:17187800-17192000	Strong transcription	K562	blood
35	chr21:17187800-17192400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr21:17187800-17192800	Strong transcription	Primary B cells from cord blood	blood
37	chr21:17187800-17203600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr21:17188000-17192400	Strong transcription	Dnd41	blood
39	chr21:17188000-17192600	Strong transcription	Fetal Thymus	thymus
40	chr21:17188000-17193600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr21:17188000-17197000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr21:17188000-17197600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr21:17188000-17199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr21:17188000-17199200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr21:17188000-17203800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr21:17188000-17208800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr21:17188000-17214000	Weak transcription	Gastric	stomach
48	chr21:17188000-17229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr21:17188000-17240200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr21:17188200-17192000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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