Variant report

Variant	rs73892547
Chromosome Location	chr21:17198366-17198367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:17102159..17104767-chr21:17197837..17199480,2	K562	blood:
2	chr21:17101236..17104015-chr21:17196099..17198458,3	MCF-7	breast:
3	chr21:17099652..17105374-chr21:17196149..17200245,6	MCF-7	breast:
4	chr21:17101218..17103659-chr21:17197837..17200378,2	K562	blood:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12106392	1.00[EUR][1000 genomes]
rs12106393	1.00[EUR][1000 genomes]
rs56159310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56292282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57732471	1.00[AMR][1000 genomes]
rs59764941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73355468	1.00[EUR][1000 genomes]
rs73892523	1.00[AMR][1000 genomes]
rs73892534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892535	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892541	1.00[EUR][1000 genomes]
rs73892542	1.00[EUR][1000 genomes]
rs73892545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892552	1.00[EUR][1000 genomes]
rs73892554	1.00[EUR][1000 genomes]
rs73892557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892558	1.00[AMR][1000 genomes]
rs8134308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
2	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
3	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
5	chr21:17177200-17208800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr21:17178400-17248200	Weak transcription	Esophagus	oesophagus
7	chr21:17178400-17252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr21:17178800-17211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr21:17180800-17199200	Weak transcription	HSMMtube	muscle
10	chr21:17182400-17227800	Weak transcription	Psoas Muscle	Psoas
11	chr21:17184000-17203800	Weak transcription	Brain Hippocampus Middle	brain
12	chr21:17184000-17209800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr21:17186200-17204200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr21:17187400-17208800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr21:17187800-17203600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr21:17188000-17199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr21:17188000-17199200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr21:17188000-17203800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr21:17188000-17208800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr21:17188000-17214000	Weak transcription	Gastric	stomach
21	chr21:17188000-17229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr21:17188000-17240200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr21:17188200-17203800	Weak transcription	Fetal Lung	lung
24	chr21:17188200-17213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr21:17188200-17246800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr21:17188400-17198400	Weak transcription	A549	lung
27	chr21:17188400-17206600	Weak transcription	Stomach Mucosa	stomach
28	chr21:17188400-17247200	Weak transcription	Ovary	ovary
29	chr21:17188400-17253200	Weak transcription	Fetal Brain Female	brain
30	chr21:17188600-17199200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr21:17188600-17210000	Weak transcription	Aorta	Aorta
32	chr21:17188600-17210400	Weak transcription	Fetal Intestine Small	intestine
33	chr21:17188600-17213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr21:17188800-17206400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr21:17188800-17247000	Weak transcription	Brain Germinal Matrix	brain
36	chr21:17188800-17252600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr21:17189000-17202400	Weak transcription	HepG2	liver
38	chr21:17189000-17203000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr21:17190200-17199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr21:17190200-17199200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr21:17190200-17203800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr21:17190200-17245400	Weak transcription	Lung	lung
43	chr21:17190200-17247200	Weak transcription	Pancreas	Pancrea
44	chr21:17190400-17203800	Weak transcription	Brain Angular Gyrus	brain
45	chr21:17190400-17247200	Weak transcription	Spleen	Spleen
46	chr21:17190400-17247400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr21:17190600-17200800	Weak transcription	Fetal Stomach	stomach
48	chr21:17190600-17203600	Weak transcription	Thymus	Thymus
49	chr21:17190600-17203800	Weak transcription	Brain Anterior Caudate	brain
50	chr21:17191000-17227800	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links