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Variant report
Variant
rs998360
Chromosome Location
chr6:5923152-5923153
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:12)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
POLR2A
chr6:5923023-5923205
H1-hESC
embryonic stem cell:
n/a
n/a
2
HEY1
chr6:5923054-5923216
K562
blood:
n/a
n/a
3
POLR2A
chr6:5923077-5923190
Hela-S3
cervix:
n/a
n/a
4
POLR2A
chr6:5922945-5923166
HUVEC
blood vessel:
n/a
n/a
5
POLR2A
chr6:5923055-5923212
Hela-S3
cervix:
n/a
n/a
6
POLR2A
chr6:5923059-5923210
GM12891
blood:
n/a
n/a
7
HEY1
chr6:5923081-5923186
HepG2
liver:
n/a
n/a
8
POLR2A
chr6:5923072-5923196
H1-hESC
embryonic stem cell:
n/a
n/a
9
POLR2A
chr6:5923063-5923206
GM12878
blood:
n/a
n/a
10
POLR2A
chr6:5923076-5923192
GM12891
blood:
n/a
n/a
11
POLR2A
chr6:5923046-5923222
GM12892
blood:
n/a
n/a
12
POLR2A
chr6:5923092-5923176
A549
lung:
n/a
n/a
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:5921958..5924499-chr6:5927250..5929077,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
RN7SL221P
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:3)
rs_ID
r
2
[population]
rs6919620
0.91[CHB][hapmap]
rs9378995
0.82[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9405882
0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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