Variant report

Variant	rs9993447
Chromosome Location	chr4:30817994-30817995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10012692	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs10023716	1.00[AMR][1000 genomes]
rs28420961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489673	1.00[AMR][1000 genomes]
rs28629963	1.00[AMR][1000 genomes]
rs28647449	1.00[AMR][1000 genomes]
rs28720058	1.00[AMR][1000 genomes]
rs9654124	0.86[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30804800-30819400	Weak transcription	Aorta	Aorta
3	chr4:30811400-30819000	Weak transcription	Fetal Heart	heart
4	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30817200-30818400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:30817600-30818800	Weak transcription	Fetal Lung	lung
7	chr4:30817600-30820400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:30817800-30819800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:30817800-30820200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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