Variant report
| Variant | rs9994864 |
|---|---|
| Chromosome Location | chr4:20133330-20133331 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10027583 | 0.87[EUR][1000 genomes] |
| rs10028957 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16869213 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16869250 | 0.87[EUR][1000 genomes] |
| rs16869307 | 0.87[EUR][1000 genomes] |
| rs16869324 | 0.81[EUR][1000 genomes] |
| rs16869332 | 0.81[EUR][1000 genomes] |
| rs16869334 | 0.81[EUR][1000 genomes] |
| rs2322428 | 0.87[EUR][1000 genomes] |
| rs28368613 | 0.81[EUR][1000 genomes] |
| rs28376053 | 0.86[EUR][1000 genomes] |
| rs28583512 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs28661856 | 0.87[EUR][1000 genomes] |
| rs28696258 | 0.87[EUR][1000 genomes] |
| rs28765165 | 0.80[EUR][1000 genomes] |
| rs55749296 | 0.87[EUR][1000 genomes] |
| rs56191900 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66614292 | 0.84[EUR][1000 genomes] |
| rs6849518 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73249157 | 0.81[EUR][1000 genomes] |
| rs73249158 | 0.81[EUR][1000 genomes] |
| rs73249175 | 0.80[EUR][1000 genomes] |
| rs7356248 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7356250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs750268 | 0.81[EUR][1000 genomes] |
| rs9985922 | 0.80[EUR][1000 genomes] |
| rs9998416 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:20131600-20134000 | Weak transcription | Pancreas | Pancrea |
