Variant report
| Variant | rs9997520 |
|---|---|
| Chromosome Location | chr4:91439574-91439575 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:91436644..91439934-chr4:91440131..91443030,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10000109 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs10008616 | 0.85[EUR][1000 genomes] |
| rs10025951 | 0.87[CEU][hapmap] |
| rs10026030 | 0.85[EUR][1000 genomes] |
| rs10026112 | 0.87[CEU][hapmap] |
| rs10031148 | 0.87[CEU][hapmap] |
| rs28458229 | 0.87[AMR][1000 genomes] |
| rs28485737 | 0.85[EUR][1000 genomes] |
| rs28493846 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs28609018 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs28791543 | 0.85[EUR][1000 genomes] |
| rs28795438 | 0.81[EUR][1000 genomes] |
| rs28854609 | 0.87[EUR][1000 genomes] |
| rs62312943 | 0.85[EUR][1000 genomes] |
| rs62312944 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62312946 | 0.81[EUR][1000 genomes] |
| rs62312948 | 0.81[EUR][1000 genomes] |
| rs62312952 | 0.87[EUR][1000 genomes] |
| rs6838438 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap] |
| rs6843629 | 0.85[EUR][1000 genomes] |
| rs6844373 | 0.85[EUR][1000 genomes] |
| rs6848809 | 0.85[CEU][hapmap] |
| rs72885029 | 0.85[EUR][1000 genomes] |
| rs72885033 | 0.81[EUR][1000 genomes] |
| rs7671066 | 0.87[CEU][hapmap] |
| rs9985613 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9994165 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv999065 | chr4:91049593-91520073 | Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv1830936 | chr4:91287204-91546380 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv879543 | chr4:91428124-91524285 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
