Variant report

Variant	esv16103
Chromosome Location	chr15:78111094-78112815
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr15:78111596-78111934	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr15:78112581-78112794	H1-hESC	embryonic stem cell:	n/a	n/a
3	BHLHE40	chr15:78112561-78112947	K562	blood:	n/a	n/a
4	CCNT2	chr15:78112531-78112910	K562	blood:	n/a	n/a
5	CHD1	chr15:78111718-78111742	H1-hESC	embryonic stem cell:	n/a	n/a
6	CHD2	chr15:78112731-78112878	Hela-S3	cervix:	n/a	n/a
7	CHD2	chr15:78112768-78112882	H1-hESC	embryonic stem cell:	n/a	n/a
8	CREB1	chr15:78112210-78112963	A549	lung:	n/a	n/a
9	CTBP2	chr15:78111581-78112011	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr15:78112680-78112830	GM12867	blood:	n/a	chr15:78112771-78112781
11	CTCF	chr15:78112700-78112850	HMEC	breast:	n/a	chr15:78112771-78112781
12	CTCF	chr15:78112780-78112930	HA-sp	spinal cord:	n/a	n/a
13	CTCF	chr15:78112694-78112878	GM13977	blood:	n/a	chr15:78112771-78112781
14	CTCF	chr15:78112626-78112946	K562	blood:	n/a	chr15:78112771-78112781
15	CTCF	chr15:78112680-78112830	HUVEC	blood vessel:	n/a	chr15:78112771-78112781
16	CTCF	chr15:78112720-78112870	HFF	foreskin:	n/a	chr15:78112771-78112781
17	CTCF	chr15:78112760-78112910	AoAF	blood vessel:	n/a	chr15:78112771-78112781
18	CTCF	chr15:78112693-78112845	LNCaP	prostate:	n/a	chr15:78112771-78112781
19	CTCF	chr15:78112760-78112910	RPTEC	kidney:	n/a	chr15:78112771-78112781
20	CTCF	chr15:78112680-78112830	GM12878	blood:	n/a	chr15:78112771-78112781
21	CTCF	chr15:78112720-78112870	K562	blood:	n/a	chr15:78112771-78112781
22	CTCF	chr15:78112509-78113097	MCF-7	breast:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
23	CTCF	chr15:78112700-78112850	Hela-S3	cervix:	n/a	chr15:78112771-78112781
24	CTCF	chr15:78112660-78112810	AG04449	skin:	n/a	chr15:78112771-78112781
25	CTCF	chr15:78112720-78112870	HEK293	kidney:	n/a	chr15:78112771-78112781
26	CTCF	chr15:78111763-78111842	GM12891	blood:	n/a	n/a
27	CTCF	chr15:78112693-78112878	GM19239	blood:	n/a	chr15:78112771-78112781
28	CTCF	chr15:78112700-78112850	HRE	kidney:	n/a	chr15:78112771-78112781
29	CTCF	chr15:78112760-78112910	BJ	skin:	n/a	chr15:78112771-78112781
30	CTCF	chr15:78112720-78112870	HMF	breast:	n/a	chr15:78112771-78112781
31	CTCF	chr15:78112659-78112910	MCF-7	breast:	n/a	chr15:78112771-78112781
32	CTCF	chr15:78112630-78112900	A549	lung:	n/a	chr15:78112771-78112781
33	CTCF	chr15:78112685-78112875	GM19238	blood:	n/a	chr15:78112771-78112781
34	CTCF	chr15:78112680-78112830	Caco-2	colon:	n/a	chr15:78112771-78112781
35	CTCF	chr15:78112692-78112820	Pancreas_OC	pancreas:	n/a	chr15:78112771-78112781
36	CTCF	chr15:78112465-78113115	HCT-116	colon:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
37	CTCF	chr15:78112362-78114448	A549	lung:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781 chr15:78113982-78114000
38	CTCF	chr15:78112699-78112825	Spleen_OC	spleen:	n/a	chr15:78112771-78112781
39	CTCF	chr15:78112669-78112888	GM12892	blood:	n/a	chr15:78112771-78112781
40	CTCF	chr15:78112690-78112852	Medullo	brain:	n/a	chr15:78112771-78112781
41	CTCF	chr15:78112505-78112550	MCF-7	breast:	n/a	n/a
42	CTCF	chr15:78112660-78112810	HCT-116	colon:	n/a	chr15:78112771-78112781
43	CTCF	chr15:78112700-78112850	HCFaa	heart:	n/a	chr15:78112771-78112781
44	CTCF	chr15:78112661-78112920	K562	blood:	n/a	chr15:78112771-78112781
45	CTCF	chr15:78112700-78112850	AG04449	skin:	n/a	chr15:78112771-78112781
46	CTCF	chr15:78112680-78112830	GM12872	blood:	n/a	chr15:78112771-78112781
47	CTCF	chr15:78112680-78112970	HUVEC	blood vessel:	n/a	chr15:78112771-78112781
48	CTCF	chr15:78112660-78112810	AG09319	gingival:	n/a	chr15:78112771-78112781
49	CTCF	chr15:78112511-78112987	K562	blood:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
50	CTCF	chr15:78112640-78112790	HRPEpiC	eye:	n/a	chr15:78112771-78112781

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:78111390-78111440	SK-N-SH_RA	brain:	n/a
2	chr15:78111390-78111440	SK-N-SH_RA	brain:	n/a
3	chr15:78111390-78111440	PFSK-1	brain:	n/a
4	chr15:78111390-78111440	IMR90	lung:	fetal
5	chr15:78111196-78111246	AG10803	skin:	n/a
6	chr15:78111196-78111246	AG09319	gingival:	n/a
7	chr15:78111390-78111440	SKMC	muscle:	n/a
8	chr15:78111830-78111880	SK-N-SH	brain:	n/a
9	chr15:78111390-78111440	HRPEpiC	eye:	n/a
10	chr15:78111390-78111440	Hela-S3	cervix:	n/a
11	chr15:78111390-78111440	HRCEpiC	kidney:	n/a
12	chr15:78111830-78111880	BE2_C	brain:	n/a
13	chr15:78111196-78111246	Hepatocyte	liver:	n/a
14	chr15:78112026-78112076	MCF-7	breast:	n/a
15	chr15:78111196-78111246	HNPCEpiC	eye:	n/a
16	chr15:78111390-78111440	NHBE	bronchial:	n/a
17	chr15:78112026-78112076	GM19239	blood:	n/a
18	chr15:78111196-78111246	HRCEpiC	kidney:	n/a
19	chr15:78111830-78111880	SK-N-MC	brain:	n/a
20	chr15:78111390-78111440	SK-N-SH	brain:	n/a
21	chr15:78111830-78111880	Hepatocyte	liver:	n/a
22	chr15:78111390-78111440	PANC-1	pancreas:	n/a
23	chr15:78111196-78111246	A549	lung:	n/a
24	chr15:78111390-78111440	AG09309	skin:	n/a
25	chr15:78111196-78111246	HAEpiC	amniotic membrane:	n/a
26	chr15:78111196-78111246	SK-N-MC	brain:	n/a
27	chr15:78112026-78112076	SKMC	muscle:	n/a
28	chr15:78112026-78112076	A549	lung:	n/a
29	chr15:78111390-78111440	NHDF-neo	bronchial:	n/a
30	chr15:78111196-78111246	IMR90	lung:	fetal
31	chr15:78111196-78111246	SK-N-SH	brain:	n/a
32	chr15:78111196-78111246	ProgFib	skin:	n/a
33	chr15:78111830-78111880	GM12892	blood:	n/a
34	chr15:78112026-78112076	HCF	heart:	n/a
35	chr15:78111196-78111246	T-47D	breast:	n/a
36	chr15:78111830-78111880	AoSMC	blood vessel:	n/a
37	chr15:78111830-78111880	U87	brain:	n/a
38	chr15:78111196-78111246	H1-hESC	embryonic stem cell:	embryo
39	chr15:78112026-78112076	HCPEpiC	choroid plexus:	n/a
40	chr15:78111196-78111246	HCPEpiC	choroid plexus:	n/a
41	chr15:78112026-78112076	Jurkat	blood:	n/a
42	chr15:78111390-78111440	GM19239	blood:	n/a
43	chr15:78111390-78111440	ECC-1	luminal epithelium:	n/a
44	chr15:78111830-78111880	GM19239	blood:	n/a
45	chr15:78111830-78111880	Caco-2	colon:	n/a
46	chr15:78111196-78111246	NHBE	bronchial:	n/a
47	chr15:78111196-78111246	GM12891	blood:	n/a
48	chr15:78111390-78111440	U87	brain:	n/a
49	chr15:78111390-78111440	Caco-2	colon:	n/a
50	chr15:78111196-78111246	SKMC	muscle:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77925435..77927439-chr15:78112259..78115090,22	K562	blood:
2	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
3	chr15:78109668..78112280-chr15:78112604..78115106,3	MCF-7	breast:
4	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:
5	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
6	chr15:78093726..78095482-chr15:78109302..78111368,2	K562	blood:
7	chr15:78109668..78112280-chr15:78112604..78115106,3	MCF-7	breast:
8	chr15:77925397..77928069-chr15:78112259..78116246,3	K562	blood:
9	chr15:77925397..77927315-chr15:78112259..78115116,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBC1D2B-7	chr15:78111613-78111870	NONHSAT047458
2	lnc-TBC1D2B-7	chr15:78112376-78112566	NONHSAT047460

Variant related genes	Relation type
LINGO1	TF binding region
LINGO1	CpG island
ENSG00000169783	chromatin interactions

Extended variants
information (count: 50 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544364701	chr15:78111095-78111096	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs147212157	chr15:78111097-78111098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs559663613	chr15:78111121-78111122	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs4243054	chr15:78111156-78111157	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs372545549	chr15:78111163-78111164	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs4243055	chr15:78111216-78111217	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs527646951	chr15:78111274-78111275	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs145382349	chr15:78111295-78111296	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs180908784	chr15:78111359-78111360	Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs35981882	chr15:78111402-78111403	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs372088592	chr15:78111519-78111520	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs12911998	chr15:78111563-78111564	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs531822614	chr15:78111598-78111599	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs550026719	chr15:78111630-78111631	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs571460945	chr15:78111643-78111644	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs185470896	chr15:78111669-78111670	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs372187360	chr15:78111723-78111724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs553992491	chr15:78111743-78111744	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs561620983	chr15:78111787-78111788	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs189759565	chr15:78111797-78111798	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
21	rs565542642	chr15:78111824-78111825	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs536214865	chr15:78111874-78111875	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs554381935	chr15:78111882-78111883	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs143130993	chr15:78111915-78111916	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs113747076	chr15:78111924-78111925	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs575767569	chr15:78111929-78111930	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs7497690	chr15:78111981-78111982	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs543093259	chr15:78111999-78112000	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs55953854	chr15:78112058-78112059	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs577807521	chr15:78112143-78112144	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs7182763	chr15:78112151-78112152	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs560793934	chr15:78112184-78112185	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs534884837	chr15:78112228-78112229	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs572372510	chr15:78112232-78112233	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs56061966	chr15:78112233-78112234	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs550285306	chr15:78112234-78112235	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs376544923	chr15:78112418-78112419	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs565081708	chr15:78112496-78112497	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs532287133	chr15:78112522-78112523	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs112033856	chr15:78112524-78112525	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs112762918	chr15:78112550-78112551	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs148756623	chr15:78112607-78112608	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs536139326	chr15:78112623-78112624	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs548197962	chr15:78112640-78112641	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs569307823	chr15:78112708-78112709	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs536790759	chr15:78112720-78112721	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs74481055	chr15:78112733-78112734	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs577821892	chr15:78112804-78112805	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs539488295	chr15:78112805-78112806	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs187054427	chr15:78112814-78112815	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:234 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78107400-78111600	Weak transcription	Gastric	stomach
2	chr15:78109800-78111800	Bivalent Enhancer	Spleen	Spleen
3	chr15:78110400-78111200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:78110400-78111200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
5	chr15:78110600-78111600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78110600-78111600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
7	chr15:78110600-78111600	Bivalent Enhancer	Esophagus	oesophagus
8	chr15:78110600-78111600	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr15:78110600-78111800	Bivalent Enhancer	Placenta	Placenta
10	chr15:78110600-78112800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr15:78110600-78112800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr15:78110600-78113000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr15:78110600-78113000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr15:78110600-78113200	Active TSS	Brain Angular Gyrus	brain
15	chr15:78110800-78111200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr15:78110800-78111200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:78110800-78111200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr15:78110800-78111200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:78110800-78111200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:78110800-78111400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr15:78110800-78111400	Bivalent Enhancer	Fetal Brain Male	brain
22	chr15:78110800-78111600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:78110800-78111600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:78110800-78111600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:78110800-78111600	Bivalent Enhancer	Colonic Mucosa	Colon
26	chr15:78110800-78111600	Bivalent/Poised TSS	Right Ventricle	heart
27	chr15:78110800-78111600	Bivalent Enhancer	HMEC	breast
28	chr15:78110800-78112800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr15:78110800-78112800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr15:78110800-78113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:78111000-78111200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:78111000-78111200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:78111000-78111200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:78111000-78111200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
35	chr15:78111000-78111200	Bivalent Enhancer	Fetal Intestine Small	intestine
36	chr15:78111000-78111200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr15:78111000-78111200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
38	chr15:78111000-78111400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
39	chr15:78111000-78111400	Bivalent Enhancer	Fetal Heart	heart
40	chr15:78111000-78111400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr15:78111000-78111600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:78111000-78111600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:78111000-78111600	Bivalent Enhancer	Lung	lung
44	chr15:78111000-78112600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:78111000-78112600	Active TSS	Fetal Brain Female	brain
46	chr15:78111000-78112800	Active TSS	H9 Cell Line	embryonic stem cell
47	chr15:78111000-78112800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
48	chr15:78111000-78112800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
49	chr15:78111000-78112800	Bivalent/Poised TSS	Ovary	ovary
50	chr15:78111000-78113000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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