No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
1 |
rs180804100 |
chr9:140498845-140498846 |
Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
2 |
rs554538296 |
chr9:140498920-140498921 |
Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
3 |
rs574687910 |
chr9:140498944-140498945 |
Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
4 |
rs540496005 |
chr9:140498984-140498985 |
Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
5 |
rs575666389 |
chr9:140499019-140499020 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
6 |
rs559947469 |
chr9:140499024-140499025 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
7 |
rs141494141 |
chr9:140499027-140499028 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
8 |
rs185021942 |
chr9:140499044-140499045 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
9 |
rs562595193 |
chr9:140499062-140499063 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
10 |
rs72765181 |
chr9:140499072-140499073 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
11 |
rs548334770 |
chr9:140499109-140499110 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
12 |
rs568439523 |
chr9:140499133-140499134 |
Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription
|
TF binding regionCpG islandChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
13 |
rs368718276 |
chr9:140499266-140499267 |
Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
14 |
rs189351399 |
chr9:140499267-140499268 |
Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
15 |
rs375646762 |
chr9:140499268-140499269 |
Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
16 |
rs548094861 |
chr9:140499347-140499348 |
Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
17 |
rs181647662 |
chr9:140499371-140499372 |
Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
18 |
rs111780743 |
chr9:140499421-140499422 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS
|
TF binding regionCpG islandChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
19 |
rs540013851 |
chr9:140499557-140499558 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
20 |
rs546366831 |
chr9:140499567-140499568 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS
|
TF binding regionChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
21 |
rs4494021 |
chr9:140499646-140499647 |
Active TSS Weak transcription Enhancers Flanking Active TSS
|
TF binding regionCpG islandChromatin interactive region
|
5 gene(s)
|
LD-proxies of rSNPOverlapped rCNV
|
mRNA abundance
|
22 |
rs537941885 |
chr9:140499648-140499649 |
Active TSS Weak transcription Enhancers Flanking Active TSS
|
TF binding regionCpG islandChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
23 |
rs554294094 |
chr9:140499654-140499655 |
Active TSS Weak transcription Enhancers Flanking Active TSS
|
TF binding regionCpG islandChromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
24 |
rs186573104 |
chr9:140499855-140499856 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers
|
TF binding regionChromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
25 |
rs540171161 |
chr9:140500115-140500116 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers
|
TF binding regionChromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
26 |
rs553621923 |
chr9:140500121-140500122 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers
|
TF binding regionChromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
27 |
rs576630709 |
chr9:140500196-140500197 |
Active TSS Weak transcription Bivalent/Poised TSS Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
28 |
rs200306122 |
chr9:140500215-140500216 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
29 |
rs112727570 |
chr9:140500219-140500220 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
30 |
rs562332893 |
chr9:140500268-140500269 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
31 |
rs576509066 |
chr9:140500275-140500276 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
32 |
rs112163118 |
chr9:140500348-140500349 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
33 |
rs542288122 |
chr9:140500357-140500358 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
34 |
rs112319793 |
chr9:140500381-140500382 |
Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
35 |
rs527651007 |
chr9:140500441-140500442 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
36 |
rs117137535 |
chr9:140500443-140500444 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
37 |
rs376899985 |
chr9:140500474-140500475 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
38 |
rs564725780 |
chr9:140500494-140500495 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
39 |
rs533577020 |
chr9:140500545-140500546 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
40 |
rs550442464 |
chr9:140500551-140500552 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
41 |
rs570207500 |
chr9:140500581-140500582 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
42 |
rs537575070 |
chr9:140500599-140500600 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers
|
Chromatin interactive region
|
5 gene(s)
|
Overlapped CNVs
|
n/a
|
43 |
rs548230987 |
chr9:140500608-140500609 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
44 |
rs567985915 |
chr9:140500624-140500625 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers
|
Chromatin interactive region
|
6 gene(s)
|
Overlapped CNVs
|
n/a
|
45 |
rs368970574 |
chr9:140500661-140500662 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers
|
Chromatin interactive region
|
7 gene(s)
|
Overlapped CNVs
|
n/a
|