Variant report

Variant	nsv1057618
Chromosome Location	chr20:25665455-25744711
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1221)
CpG islands
(count:856)
Chromatin interactive
region (count:30)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1221 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:25677320-25677880	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25680595-25680824	K562	blood:	n/a	n/a
3	ATF1	chr20:25677274-25677840	K562	blood:	n/a	n/a
4	ATF2	chr20:25677236-25677565	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr20:25677233-25677726	GM12878	blood:	n/a	n/a
6	ATF2	chr20:25677080-25677802	GM12878	blood:	n/a	n/a
7	ATF3	chr20:25677314-25677673	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr20:25677026-25677723	HepG2	liver:	n/a	n/a
9	ATF3	chr20:25677322-25677783	GM12878	blood:	n/a	n/a
10	ATF3	chr20:25677228-25677741	K562	blood:	n/a	n/a
11	ATF3	chr20:25677385-25677707	K562	blood:	n/a	n/a
12	ATF3	chr20:25677287-25677808	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF3	chr20:25677151-25677708	A549	lung:	n/a	n/a
14	BACH1	chr20:25676650-25677804	H1-hESC	embryonic stem cell:	n/a	n/a
15	BATF	chr20:25666354-25666589	GM12878	blood:	n/a	chr20:25666500-25666508
16	BATF	chr20:25677396-25677756	GM12878	blood:	n/a	n/a
17	BATF	chr20:25734352-25734580	GM12878	blood:	n/a	n/a
18	BCL11A	chr20:25737731-25737913	GM12878	blood:	n/a	n/a
19	BCLAF1	chr20:25677144-25677775	GM12878	blood:	n/a	n/a
20	BCLAF1	chr20:25677029-25677877	GM12878	blood:	n/a	n/a
21	BHLHE40	chr20:25731988-25732189	K562	blood:	n/a	n/a
22	BHLHE40	chr20:25677136-25677805	GM12878	blood:	n/a	n/a
23	BHLHE40	chr20:25676071-25676250	GM12878	blood:	n/a	n/a
24	BHLHE40	chr20:25666868-25666932	K562	blood:	n/a	n/a
25	BHLHE40	chr20:25666346-25666586	GM12878	blood:	n/a	n/a
26	BHLHE40	chr20:25677331-25677787	K562	blood:	n/a	n/a
27	BRCA1	chr20:25677310-25677671	H1-hESC	embryonic stem cell:	n/a	n/a
28	BRCA1	chr20:25677353-25677866	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr20:25677262-25677749	HepG2	liver:	n/a	n/a
30	BRCA1	chr20:25731987-25732070	HepG2	liver:	n/a	n/a
31	BRCA1	chr20:25677034-25677218	GM12878	blood:	n/a	n/a
32	CBX3	chr20:25677357-25677727	K562	blood:	n/a	n/a
33	CCNT2	chr20:25676931-25677816	K562	blood:	n/a	chr20:25676965-25676974
34	CEBPB	chr20:25726257-25726525	HepG2	liver:	n/a	chr20:25726399-25726410
35	CEBPB	chr20:25680733-25680807	A549	lung:	n/a	n/a
36	CEBPB	chr20:25677286-25677689	HepG2	liver:	n/a	n/a
37	CEBPB	chr20:25677384-25677701	K562	blood:	n/a	n/a
38	CEBPB	chr20:25741823-25742042	HepG2	liver:	n/a	chr20:25741983-25741994
39	CEBPB	chr20:25741990-25742017	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr20:25741860-25742060	K562	blood:	n/a	chr20:25741983-25741994
41	CEBPB	chr20:25677414-25677763	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr20:25736429-25736642	HepG2	liver:	n/a	chr20:25736503-25736514 chr20:25736533-25736544
43	CEBPB	chr20:25731932-25732389	HepG2	liver:	n/a	n/a
44	CEBPD	chr20:25676629-25677843	HepG2	liver:	n/a	n/a
45	CEBPD	chr20:25731486-25732115	HepG2	liver:	n/a	n/a
46	CEBPD	chr20:25677016-25677500	HepG2	liver:	n/a	n/a
47	CHD1	chr20:25676783-25677882	GM12878	blood:	n/a	n/a
48	CHD1	chr20:25676918-25676985	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD1	chr20:25741744-25742036	IMR90	lung:	n/a	n/a
50	CHD2	chr20:25676853-25677784	GM12878	blood:	n/a	n/a

(count:856 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:25674725-25674775	SK-N-SH	brain:	n/a
2	chr20:25677489-25677539	HPAEpiC	pulmonary alveolar:	n/a
3	chr20:25674725-25674775	SK-N-SH	brain:	n/a
4	chr20:25677489-25677539	HPAEpiC	pulmonary alveolar:	n/a
5	chr20:25677664-25677714	HCPEpiC	choroid plexus:	n/a
6	chr20:25677623-25677673	SK-N-SH_RA	brain:	n/a
7	chr20:25677664-25677714	K562	blood:	n/a
8	chr20:25677290-25677340	HL-60	blood:	n/a
9	chr20:25677563-25677613	HIPEpiC	eye:	n/a
10	chr20:25676884-25676934	MCF10A-Er-Src	breast:	n/a
11	chr20:25674198-25674248	HCPEpiC	choroid plexus:	n/a
12	chr20:25681052-25681102	MCF-7	breast:	n/a
13	chr20:25677664-25677714	HAEpiC	amniotic membrane:	n/a
14	chr20:25677290-25677340	AG04449	skin:	fetal
15	chr20:25677496-25677546	Jurkat	blood:	n/a
16	chr20:25677738-25677788	NHDF-neo	bronchial:	n/a
17	chr20:25677489-25677539	ECC-1	luminal epithelium:	n/a
18	chr20:25676884-25676934	ECC-1	luminal epithelium:	n/a
19	chr20:25677738-25677788	ECC-1	luminal epithelium:	n/a
20	chr20:25677290-25677340	BJ	skin:	n/a
21	chr20:25674725-25674775	ProgFib	skin:	n/a
22	chr20:25677673-25677723	GM12878	blood:	n/a
23	chr20:25677664-25677714	NH-A	brain:	n/a
24	chr20:25677623-25677673	K562	blood:	n/a
25	chr20:25677738-25677788	HAEpiC	amniotic membrane:	n/a
26	chr20:25674725-25674775	ECC-1	luminal epithelium:	n/a
27	chr20:25676884-25676934	HRCEpiC	kidney:	n/a
28	chr20:25674198-25674248	GM06990	blood:	n/a
29	chr20:25677496-25677546	LNCaP	prostate:	n/a
30	chr20:25677489-25677539	LNCaP	prostate:	n/a
31	chr20:25677582-25677632	HRPEpiC	eye:	n/a
32	chr20:25681052-25681102	HEK293	kidney:	embryo
33	chr20:25681052-25681102	HRE	kidney:	n/a
34	chr20:25674725-25674775	HRCEpiC	kidney:	n/a
35	chr20:25677688-25677738	AG04450	lung:	fetal
36	chr20:25677582-25677632	Hepatocyte	liver:	n/a
37	chr20:25681052-25681102	GM19239	blood:	n/a
38	chr20:25677489-25677539	CMK	blood:	n/a
39	chr20:25677738-25677788	HNPCEpiC	eye:	n/a
40	chr20:25677738-25677788	HCT-116	colon:	n/a
41	chr20:25677623-25677673	Jurkat	blood:	n/a
42	chr20:25677489-25677539	RPTEC	kidney:	n/a
43	chr20:25674198-25674248	NB4	blood:	n/a
44	chr20:25677623-25677673	NHDF-neo	bronchial:	n/a
45	chr20:25677582-25677632	HepG2	liver:	n/a
46	chr20:25677489-25677539	SKMC	muscle:	n/a
47	chr20:25674725-25674775	PFSK-1	brain:	n/a
48	chr20:25677496-25677546	ProgFib	skin:	n/a
49	chr20:25677290-25677340	SK-N-SH	brain:	n/a
50	chr20:25677738-25677788	GM12892	blood:	n/a

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:25675586..25677215-chr20:25728197..25729782,2	MCF-7	breast:
2	chr20:25666393..25667340-chr20:25675280..25676053,2	MCF-7	breast:
3	chr20:25727469..25729069-chr20:25729208..25731767,2	MCF-7	breast:
4	chr20:25603699..25606216-chr20:25676779..25679090,3	MCF-7	breast:
5	chr15:51057473..51058014-chr20:25677690..25678458,2	Hela-S3	cervix:
6	chr20:25724362..25726772-chr20:25730117..25732071,3	MCF-7	breast:
7	chr20:25603480..25606369-chr20:25672275..25675110,4	MCF-7	breast:
8	chr20:25604068..25607059-chr20:25675582..25678596,4	MCF-7	breast:
9	chr20:25719439..25721386-chr20:25725863..25727758,2	K562	blood:
10	chr20:25675586..25677215-chr20:25728197..25729782,2	MCF-7	breast:
11	chr20:25673244..25674804-chr20:25675051..25677255,2	K562	blood:
12	chr20:25727469..25729069-chr20:25729208..25731767,2	MCF-7	breast:
13	chr20:25670546..25672193-chr20:25675411..25678259,2	MCF-7	breast:
14	chr20:25565180..25567156-chr20:25676091..25678288,2	MCF-7	breast:
15	chr20:25671071..25673125-chr20:25675873..25678423,2	K562	blood:
16	chr15:91260044..91260612-chr20:25677141..25678100,2	Hela-S3	cervix:
17	chr20:25602965..25606226-chr20:25676160..25678613,3	K562	blood:
18	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
19	chr20:25722229..25725727-chr20:25729009..25731451,3	MCF-7	breast:
20	chr20:25719439..25721386-chr20:25725863..25727758,2	K562	blood:
21	chr20:25477099..25478848-chr20:25676437..25678716,2	MCF-7	breast:
22	chr20:25603881..25606612-chr20:25668010..25670254,2	K562	blood:
23	chr20:25665917..25666615-chrX:68763514..68764371,2	MCF-7	breast:
24	chr11:122931373..122931944-chr20:25676667..25677267,2	NB4	blood:
25	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:
26	chr20:25722229..25725727-chr20:25729009..25731451,3	MCF-7	breast:
27	chr20:25673244..25674804-chr20:25675051..25677255,2	K562	blood:
28	chr20:25722430..25724237-chr20:25730774..25732433,2	MCF-7	breast:
29	chr20:25666393..25667340-chr20:25675280..25676053,2	MCF-7	breast:
30	chr20:25671071..25673125-chr20:25675586..25678423,3	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-1	chr20:25730059-25730236	XLOC_013708
2	lnc-GINS1-2	chr20:25733199-25733422	NONHSAT079184
3	lnc-GINS1-7	chr20:25714900-25715729	NONHSAT079180
4	lnc-GINS1-6	chr20:25681199-25681397	NONHSAT079179
5	lnc-GINS1-2	chr20:25733199-25733422	NONHSAT079183
6	lnc-GINS1-2	chr20:25731854-25731974	ENSG00000226465.1
7	lnc-NANP-1	chr20:25677395-25677451	NONHSAT079178
8	lnc-NANP-1	chr20:25666632-25666885	NONHSAT079178
9	lnc-NANP-1	chr20:25667027-25667102	NONHSAT079178
10	lnc-NANP-1	chr20:25666203-25666298	NONHSAT079178
11	lnc-GINS1-2	chr20:25731520-25731591	NONHSAT079183
12	lnc-GINS1-6	chr20:25679854-25679974	NONHSAT079179
13	lnc-GINS1-2	chr20:25733199-25733397	ENSG00000226465.1
14	lnc-GINS1-2	chr20:25731813-25731974	NONHSAT079184
15	lnc-FAM182B-1	chr20:25730940-25732440	XLOC_013708

No data

Variant related genes	Relation type
VN1R108P	TF binding region
ENSG00000226465	TF binding region
ZNF337	TF binding region
VN1R108P	CpG island
ENSG00000226465	CpG island
ZNF337	CpG island
ENSG00000170191	chromatin interactions
ENSG00000130684	chromatin interactions
ENSG00000138600	chromatin interactions
ENSG00000101004	chromatin interactions
ENSG00000259736	chromatin interactions
ENSG00000197299	chromatin interactions
ENSG00000226465	chromatin interactions
ENSG00000213742	chromatin interactions
PTPLAD1	miRNA target sites
PTPMT1	miRNA target sites

Extended variants
information (count: 3793 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:3793 , 50 per page) page: 1 2 3 4 5 6 7 ... 76

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552198481	chr20:25665486-25665487	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs568986214	chr20:25665526-25665527	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs116151007	chr20:25665529-25665530	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs548675946	chr20:25665543-25665544	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs568132206	chr20:25665571-25665572	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs533996692	chr20:25665609-25665610	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs553746425	chr20:25665612-25665613	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs567429001	chr20:25665613-25665614	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs6107065	chr20:25665654-25665655	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs6107066	chr20:25665708-25665709	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs6107067	chr20:25665721-25665722	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs537899721	chr20:25665732-25665733	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs60003095	chr20:25665755-25665756	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs553976436	chr20:25665756-25665757	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs369067258	chr20:25665757-25665758	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs190163006	chr20:25665843-25665844	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs199610962	chr20:25665844-25665845	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs372994132	chr20:25665845-25665846	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs541526111	chr20:25665867-25665868	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs369509729	chr20:25665870-25665871	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs374276302	chr20:25665889-25665890	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs182478781	chr20:25665945-25665946	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs555460745	chr20:25665948-25665949	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs12480570	chr20:25665983-25665984	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs574894348	chr20:25665987-25665988	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs540861939	chr20:25666033-25666034	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs560408695	chr20:25666087-25666088	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs532693947	chr20:25666107-25666108	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs186757879	chr20:25666123-25666124	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs562507586	chr20:25666129-25666130	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs41275512	chr20:25666149-25666150	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs367806830	chr20:25666163-25666164	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs531616176	chr20:25666211-25666212	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs202151029	chr20:25666212-25666213	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs370531027	chr20:25666221-25666222	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs375335236	chr20:25666223-25666224	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs147285771	chr20:25666265-25666266	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs141028506	chr20:25666275-25666276	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs144914818	chr20:25666278-25666279	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs147469029	chr20:25666281-25666282	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs139245838	chr20:25666286-25666287	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs140614419	chr20:25666310-25666311	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs368168820	chr20:25666348-25666349	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs527487675	chr20:25666408-25666409	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs79511081	chr20:25666434-25666435	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs570738867	chr20:25666462-25666463	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs539780319	chr20:25666484-25666485	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs556512425	chr20:25666526-25666527	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs79612570	chr20:25666537-25666538	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs535440751	chr20:25666556-25666557	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1401 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25656600-25667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:25657200-25666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:25657200-25667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:25657200-25674200	Weak transcription	Fetal Heart	heart
5	chr20:25657400-25666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:25657400-25666000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:25657400-25666000	Weak transcription	Psoas Muscle	Psoas
8	chr20:25657400-25666600	Weak transcription	Pancreas	Pancrea
9	chr20:25657400-25676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr20:25657600-25665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr20:25657600-25665800	Weak transcription	Right Ventricle	heart
12	chr20:25657600-25665800	Weak transcription	Spleen	Spleen
13	chr20:25657600-25666000	Weak transcription	Brain Substantia Nigra	brain
14	chr20:25657600-25666000	Weak transcription	Esophagus	oesophagus
15	chr20:25657600-25666000	Weak transcription	Gastric	stomach
16	chr20:25657600-25666000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr20:25657600-25666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:25657600-25667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr20:25657600-25672200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr20:25657600-25672600	Weak transcription	Fetal Brain Male	brain
21	chr20:25657600-25676000	Weak transcription	Stomach Mucosa	stomach
22	chr20:25657600-25676200	Weak transcription	Hela-S3	cervix
23	chr20:25657600-25676200	Weak transcription	K562	blood
24	chr20:25657600-25676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr20:25657800-25667000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr20:25657800-25667200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr20:25657800-25676000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr20:25657800-25676200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr20:25657800-25676200	Weak transcription	Colonic Mucosa	Colon
30	chr20:25657800-25676200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr20:25658000-25667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr20:25658200-25676200	Weak transcription	Fetal Kidney	kidney
33	chr20:25658400-25676200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr20:25658600-25665800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr20:25658600-25666000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr20:25658800-25676200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr20:25659000-25676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr20:25659600-25666000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr20:25659600-25666000	Weak transcription	Aorta	Aorta
40	chr20:25659600-25666000	Weak transcription	Fetal Intestine Small	intestine
41	chr20:25659600-25667600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr20:25660600-25676000	Weak transcription	HUVEC	blood vessel
43	chr20:25661000-25666000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr20:25662000-25665800	Weak transcription	Brain Anterior Caudate	brain
45	chr20:25662000-25666000	Weak transcription	Brain Angular Gyrus	brain
46	chr20:25662200-25665800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr20:25662200-25665800	Weak transcription	Placenta	Placenta
48	chr20:25662200-25666000	Weak transcription	Lung	lung
49	chr20:25662200-25666000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr20:25662200-25672000	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links