Variant report
| Variant | nsv442913 |
|---|---|
| Chromosome Location | chr4:98172414-98185132 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TSPAN5-3 | chr4:98184599-98184732 | NONHSAT097477 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs573121129 | chr4:98173803-98173804 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs547498754 | chr4:98173808-98173809 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs10033562 | chr4:98173840-98173841 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs144720615 | chr4:98173853-98173854 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs193277070 | chr4:98173863-98173864 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs545034259 | chr4:98173902-98173903 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs17026587 | chr4:98173925-98173926 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 8 | rs532481044 | chr4:98173963-98173964 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs184170998 | chr4:98173965-98173966 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs560938379 | chr4:98173966-98173967 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs189399518 | chr4:98173996-98173997 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs528240385 | chr4:98174637-98174638 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs369523639 | chr4:98174781-98174782 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs546383194 | chr4:98174800-98174801 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs368449689 | chr4:98184630-98184631 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs373904808 | chr4:98184657-98184658 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs144273233 | chr4:98184672-98184673 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs181006759 | chr4:98184716-98184717 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:78)
| Disease | PMID | Source |
|---|---|---|
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Melanoma | 18172304 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Parkinson disease | 18923514 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Cancer | 21183584 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Malignant mesothelioma | 18160781 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Pleural malignant mesothelioma | 18160781 | CNVD |
| Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| 4q-syndrome | 17576883 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Muscular dystrophy | 21149563 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Lung cancer | 19208797 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Cancer | 22429812 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Autism | 18414403 | CNVD |
| primary effusion lymphomas | 17116491 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Esophageal adenocarcinoma | 18820669 | CNVD |
| Colorectal cancer | 20459617 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Cancer | 19907438 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 19197363 | CNVD |
| Melanoma | 20688739 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98173800-98174000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr4:98174600-98174800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
