Variant report
| Variant | rs17026587 |
|---|---|
| Chromosome Location | chr4:98173925-98173926 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10452173 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11941794 | 0.87[EUR][1000 genomes] |
| rs55649133 | 0.87[EUR][1000 genomes] |
| rs55752282 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs56403113 | 0.87[EUR][1000 genomes] |
| rs59643119 | 0.85[EUR][1000 genomes] |
| rs61220489 | 0.87[EUR][1000 genomes] |
| rs66604908 | 0.87[EUR][1000 genomes] |
| rs6837816 | 0.87[EUR][1000 genomes] |
| rs72674088 | 0.86[EUR][1000 genomes] |
| rs72674090 | 0.87[EUR][1000 genomes] |
| rs72674091 | 0.87[EUR][1000 genomes] |
| rs72674093 | 0.87[EUR][1000 genomes] |
| rs72676503 | 0.87[EUR][1000 genomes] |
| rs72676512 | 0.87[EUR][1000 genomes] |
| rs72676517 | 0.87[EUR][1000 genomes] |
| rs72676518 | 0.87[EUR][1000 genomes] |
| rs72676537 | 0.87[EUR][1000 genomes] |
| rs72676538 | 0.87[EUR][1000 genomes] |
| rs72676541 | 0.87[EUR][1000 genomes] |
| rs72676554 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72676562 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72676566 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7679904 | 0.81[ASN][1000 genomes] |
| rs7696037 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv822656 | chr4:98172266-98187338 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 3 | esv3467260 | chr4:98172364-98187503 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv2421442 | chr4:98172414-98185132 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv442913 | chr4:98172414-98185132 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 6 | esv3467259 | chr4:98172417-98187482 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 7 | esv3467261 | chr4:98172417-98187482 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv822657 | chr4:98172476-98187201 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 9 | nsv822658 | chr4:98172476-98187338 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 10 | nsv822659 | chr4:98172603-98187338 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98173800-98174000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
