Variant report

Variant	nsv822658
Chromosome Location	chr4:98172476-98187338
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSPAN5-3	chr4:98184599-98184732	NONHSAT097477

Extended variants
information (count: 23 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573121129	chr4:98173803-98173804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs547498754	chr4:98173808-98173809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs10033562	chr4:98173840-98173841	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs144720615	chr4:98173853-98173854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs193277070	chr4:98173863-98173864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs545034259	chr4:98173902-98173903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs17026587	chr4:98173925-98173926	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs532481044	chr4:98173963-98173964	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs184170998	chr4:98173965-98173966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs560938379	chr4:98173966-98173967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs189399518	chr4:98173996-98173997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs528240385	chr4:98174637-98174638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs369523639	chr4:98174781-98174782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546383194	chr4:98174800-98174801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs368449689	chr4:98184630-98184631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs373904808	chr4:98184657-98184658	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs144273233	chr4:98184672-98184673	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs181006759	chr4:98184716-98184717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs558336363	chr4:98187219-98187220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs548185598	chr4:98187259-98187260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs373997515	chr4:98187270-98187271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs74818867	chr4:98187274-98187275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs556156202	chr4:98187298-98187299	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Cancer	19907438	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	19197363	CNVD
Melanoma	20688739	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98173800-98174000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:98174600-98174800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:98187200-98188200	Enhancers	Dnd41	blood

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