Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10452173	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941794	0.86[EUR][1000 genomes]
rs17026587	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55649133	0.86[EUR][1000 genomes]
rs55752282	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403113	0.86[EUR][1000 genomes]
rs59643119	0.83[EUR][1000 genomes]
rs61220489	0.86[EUR][1000 genomes]
rs66604908	0.86[EUR][1000 genomes]
rs6837816	0.86[EUR][1000 genomes]
rs72674088	0.84[EUR][1000 genomes]
rs72674090	0.86[EUR][1000 genomes]
rs72674091	0.86[EUR][1000 genomes]
rs72674093	0.86[EUR][1000 genomes]
rs72676503	0.86[EUR][1000 genomes]
rs72676512	0.86[EUR][1000 genomes]
rs72676517	0.86[EUR][1000 genomes]
rs72676518	0.86[EUR][1000 genomes]
rs72676537	0.86[EUR][1000 genomes]
rs72676538	0.86[EUR][1000 genomes]
rs72676541	0.86[EUR][1000 genomes]
rs72676554	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676566	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677817	0.81[EUR][1000 genomes]
rs72677826	0.81[EUR][1000 genomes]
rs7679904	0.93[ASN][1000 genomes]
rs7696037	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98156200-98157400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:98156400-98157000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:98156400-98157000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:98156400-98157400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:98156400-98157400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:98156400-98157400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:98156600-98157000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:98156600-98157000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:98156600-98157000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:98156600-98157000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:98156600-98157200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:98156600-98157200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:98156600-98157200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:98156600-98157200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:98156600-98157400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:98156600-98157400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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