Variant report
| Variant | rs72676554 |
|---|---|
| Chromosome Location | chr4:98150578-98150579 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10452173 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11941794 | 0.87[EUR][1000 genomes] |
| rs17026587 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55649133 | 0.87[EUR][1000 genomes] |
| rs55752282 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56403113 | 0.87[EUR][1000 genomes] |
| rs59643119 | 0.85[EUR][1000 genomes] |
| rs61220489 | 0.87[EUR][1000 genomes] |
| rs66604908 | 0.87[EUR][1000 genomes] |
| rs6837816 | 0.87[EUR][1000 genomes] |
| rs72674088 | 0.86[EUR][1000 genomes] |
| rs72674090 | 0.87[EUR][1000 genomes] |
| rs72674091 | 0.87[EUR][1000 genomes] |
| rs72674093 | 0.87[EUR][1000 genomes] |
| rs72676503 | 0.87[EUR][1000 genomes] |
| rs72676512 | 0.87[EUR][1000 genomes] |
| rs72676517 | 0.87[EUR][1000 genomes] |
| rs72676518 | 0.87[EUR][1000 genomes] |
| rs72676537 | 0.87[EUR][1000 genomes] |
| rs72676538 | 0.87[EUR][1000 genomes] |
| rs72676541 | 0.87[EUR][1000 genomes] |
| rs72676562 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72676566 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7679904 | 0.93[ASN][1000 genomes] |
| rs7696037 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98149400-98150800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
