Variant report

Variant	nsv482576
Chromosome Location	chrY:19958972-20208953
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:259)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:259 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrY:20101862-20101914	GM10266	blood:	n/a	n/a
2	CTCF	chrY:19991693-19991812	GM10248	blood:	n/a	n/a
3	CTCF	chrY:20031646-20031688	GM20000	blood:	n/a	n/a
4	CTCF	chrY:19990040-19990142	GM10248	blood:	n/a	n/a
5	CTCF	chrY:20117811-20117875	GM10266	blood:	n/a	n/a
6	CTCF	chrY:20088565-20088664	GM10248	blood:	n/a	n/a
7	CTCF	chrY:20105162-20105188	GM10266	blood:	n/a	n/a
8	CTCF	chrY:20061772-20061865	LNCaP	prostate:	n/a	n/a
9	CTCF	chrY:19994178-19994230	GM10248	blood:	n/a	n/a
10	CTCF	chrY:20139529-20139581	LNCaP	prostate:	n/a	n/a
11	CTCF	chrY:20133524-20133622	GM20000	blood:	n/a	n/a
12	CTCF	chrY:20105993-20106087	GM20000	blood:	n/a	n/a
13	CTCF	chrY:20019591-20019612	GM20000	blood:	n/a	n/a
14	CTCF	chrY:20044563-20044626	Medullo	brain:	n/a	n/a
15	CTCF	chrY:20105202-20105246	GM10266	blood:	n/a	n/a
16	CTCF	chrY:20014526-20014685	GM20000	blood:	n/a	n/a
17	CTCF	chrY:20092200-20092285	GM10248	blood:	n/a	n/a
18	CTCF	chrY:20036240-20036362	GM20000	blood:	n/a	n/a
19	CTCF	chrY:20078633-20078758	GM10248	blood:	n/a	n/a
20	CTCF	chrY:19965050-19965113	GM20000	blood:	n/a	n/a
21	CTCF	chrY:20064081-20064346	LNCaP	prostate:	n/a	n/a
22	CTCF	chrY:20017228-20017305	LNCaP	prostate:	n/a	n/a
23	CTCF	chrY:20095601-20095714	GM20000	blood:	n/a	n/a
24	CTCF	chrY:20110717-20110769	GM10266	blood:	n/a	n/a
25	CTCF	chrY:20038732-20038787	GM20000	blood:	n/a	n/a
26	CTCF	chrY:20089741-20089794	A549	lung:	n/a	n/a
27	CTCF	chrY:20135873-20136005	GM20000	blood:	n/a	n/a
28	CTCF	chrY:20031489-20031557	Medullo	brain:	n/a	n/a
29	CTCF	chrY:19983610-19983663	GM10266	blood:	n/a	n/a
30	CTCF	chrY:20072360-20072377	GM20000	blood:	n/a	n/a
31	CTCF	chrY:20102436-20102540	GM20000	blood:	n/a	n/a
32	CTCF	chrY:20204872-20204889	LNCaP	prostate:	n/a	n/a
33	CTCF	chrY:20086643-20086710	GM10248	blood:	n/a	n/a
34	CTCF	chrY:20064196-20064396	LNCaP	prostate:	n/a	n/a
35	CTCF	chrY:20042656-20042729	GM10266	blood:	n/a	n/a
36	CTCF	chrY:20035835-20035888	Medullo	brain:	n/a	n/a
37	CTCF	chrY:20109633-20109713	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chrY:20104125-20104186	GM10248	blood:	n/a	n/a
39	CTCF	chrY:20079744-20079815	GM10248	blood:	n/a	n/a
40	CTCF	chrY:20115473-20115487	GM20000	blood:	n/a	n/a
41	CTCF	chrY:19998597-19998620	GM10248	blood:	n/a	n/a
42	CTCF	chrY:20033248-20033341	GM10248	blood:	n/a	n/a
43	CTCF	chrY:19960195-19960278	GM10248	blood:	n/a	n/a
44	CTCF	chrY:19963505-19963578	GM10248	blood:	n/a	n/a
45	CTCF	chrY:20037370-20037461	GM10266	blood:	n/a	n/a
46	CTCF	chrY:20099338-20099387	GM10248	blood:	n/a	n/a
47	CTCF	chrY:20121914-20121936	LNCaP	prostate:	n/a	n/a
48	CTCF	chrY:20140043-20140095	GM10266	blood:	n/a	n/a
49	CTCF	chrY:20046436-20046539	GM20000	blood:	n/a	n/a
50	CTCF	chrY:20111077-20111114	GM10266	blood:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDY2A-3	chrY:20063469-20063633	NONHSAT139555
2	lnc-CDY2A-3	chrY:20063942-20065380	NONHSAT139555
3	lnc-CDY2A-5	chrY:20020635-20020855	NONHSAT139553
4	lnc-CDY2B-5	chrY:20107081-20107289	NONHSAT139557
5	lnc-CDY2A-2	chrY:20098617-20098835	NONHSAT139556
6	lnc-CDY2A-2	chrY:20100636-20100825	NONHSAT139556
7	lnc-CDY2B-5	chrY:20108912-20109132	NONHSAT139557
8	lnc-CDY2A-5	chrY:20022478-20022686	NONHSAT139553
9	lnc-CDY2B-3	chrY:20030904-20031124	NONHSAT139554
10	lnc-CDY2B-3	chrY:20026834-20026918	NONHSAT139554
11	lnc-CDY2B-3	chrY:20028903-20029103	NONHSAT139554
12	lnc-CDY2B-3	chrY:20033289-20033510	NONHSAT139554
13	lnc-CDY2B-3	chrY:20024579-20024703	NONHSAT139554
14	lnc-CDY2A-2	chrY:20102823-20102907	NONHSAT139556
15	lnc-CDY2A-2	chrY:20096229-20096449	NONHSAT139556
16	lnc-CDY2A-2	chrY:20105048-20105140	NONHSAT139556

No data

Variant related genes	Relation type
USP9YP6	TF binding region
USP9YP32	TF binding region
CDY2A	TF binding region
USP9YP34	TF binding region
CDY8P	TF binding region
CDY6P	TF binding region
CDY7P	TF binding region
CDY2B	TF binding region
USP9YP7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375489037	chrY:20064944-20064945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs35610792	chrY:20065054-20065055	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs113335840	chrY:20095681-20095682	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs199628740	chrY:20104256-20104257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs200350179	chrY:20104258-20104259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Testicular failure	20966427	CNVD
Honadal dysgenesis	22138850	CNVD
severe oligozoospermia and azoospermia	19731213	CNVD
Ewing''s sarcoma	21437220	CNVD
infertility	21210740	CNVD
Klinefelter syndrome	17968468	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
infertility	20668881	CNVD
Klinefelter syndrome	20603808	CNVD
Meiotic abnormalities	17428878	CNVD
Oligozoospermia	20576090	CNVD
Azoospermia	16445861	CNVD
Cryptorchidism	16988323	CNVD
Non-syndromic sensorineural hearing loss	17409464	CNVD
infertile	20603812	CNVD
infertile	22120929	CNVD
infertile	19369647	CNVD
severe oligozoospermia and azoospermia	21887237	CNVD
spermatozoa with elongated heads	17208942	CNVD
Azoospermia	17187159	CNVD
Oligozoospermia	17187159	CNVD
infertile	19440834	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
infertility	21340528	CNVD
Klinefelter syndrome	16612480	CNVD
infertile	16612480	CNVD
Infertility	16469004	CNVD
Recurrent pregnancy loss	20943704	CNVD
infertile	16469004	CNVD
infertility	18832950	CNVD
Maturation arrest	22820855	CNVD
Azoospermia	16709604	CNVD
Astheno-teratozoospermia syndrome	22371775	CNVD
Asthenozoospermia	22371775	CNVD
Azoospermia	22371775	CNVD
Oligoasthenoteratozoospermia	22371775	CNVD
Oligoasthenozoospermia	22371775	CNVD
Oligoteratozoospermia	22371775	CNVD
Teratozoospermia	22371775	CNVD
infertile	17554051	CNVD
Klinefelter syndrome	20805717	CNVD
subfertile	22371775	CNVD
infertile	19966830	CNVD
Azoospermia	20823911	CNVD
Non-syndromic sensorineural hearing loss	18200580	CNVD
infertile oligozoospermic	17712493	CNVD
Hereditary coagulopathy	21993689	CNVD
Honadal dysgenesis	21048976	CNVD
Breast cancer	21045282	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:20104200-20104400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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