Variant report
Variant | nsv561872 |
---|---|
Chromosome Location | chr13:62641458-62657335 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PCDH20-14 | chr13:62655235-62655462 | NONHSAT034139 |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs150543366 | chr13:62642461-62642462 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
2 | rs139876744 | chr13:62642475-62642476 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
3 | rs533010068 | chr13:62642478-62642479 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
4 | rs551147739 | chr13:62642479-62642480 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
5 | rs372565049 | chr13:62642496-62642497 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
6 | rs143128549 | chr13:62642524-62642525 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
7 | rs559842813 | chr13:62642528-62642529 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
8 | rs190513142 | chr13:62642613-62642614 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
9 | rs536947190 | chr13:62642654-62642655 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
10 | rs549769963 | chr13:62642656-62642657 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
11 | rs73222815 | chr13:62642665-62642666 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
12 | rs182175721 | chr13:62642672-62642673 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
13 | rs535965141 | chr13:62642695-62642696 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
14 | rs370282636 | chr13:62642705-62642706 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
15 | rs554000987 | chr13:62642773-62642774 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
16 | rs572485451 | chr13:62642775-62642776 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
17 | rs539684488 | chr13:62642778-62642779 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
18 | rs186014563 | chr13:62642790-62642791 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
19 | rs190887054 | chr13:62642794-62642795 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
20 | rs544088707 | chr13:62642802-62642803 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
21 | rs11843331 | chr13:62642843-62642844 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs146667850 | chr13:62642848-62642849 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
23 | rs541000813 | chr13:62642853-62642854 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs139732666 | chr13:62642860-62642861 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
25 | rs533039469 | chr13:62642922-62642923 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
26 | rs551211566 | chr13:62642933-62642934 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
27 | rs73502870 | chr13:62642949-62642950 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs79080807 | chr13:62642977-62642978 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
29 | rs548835296 | chr13:62642986-62642987 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
30 | rs575731874 | chr13:62652051-62652052 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
31 | rs542734820 | chr13:62652061-62652062 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
32 | rs79629475 | chr13:62652078-62652079 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs7322032 | chr13:62652084-62652085 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs540390423 | chr13:62652120-62652121 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
35 | rs565241544 | chr13:62652149-62652150 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
36 | rs532693310 | chr13:62652166-62652167 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
37 | rs114769071 | chr13:62652168-62652169 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs181468180 | chr13:62652193-62652194 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
39 | rs187067984 | chr13:62652205-62652206 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
40 | rs548002329 | chr13:62652237-62652238 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
41 | rs79939294 | chr13:62652285-62652286 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
42 | rs77829914 | chr13:62652306-62652307 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
43 | rs558736330 | chr13:62652329-62652330 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
44 | rs543091760 | chr13:62652332-62652333 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
45 | rs570804457 | chr13:62652344-62652345 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
46 | rs537738477 | chr13:62652348-62652349 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
47 | rs9670976 | chr13:62655236-62655237 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
48 | rs550694995 | chr13:62655278-62655279 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
49 | rs550268867 | chr13:62655346-62655347 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
50 | rs568527395 | chr13:62655356-62655357 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Prostate cancer | 16705090 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 22495311 | CNVD |
Chordoma | 21602918 | CNVD |
Bladder cancer | 21949216 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 21518781 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Intracranial aneurysm | 19064780 | CNVD |
Breast cancer | 19287154 | CNVD |
Acute myeloid leukemia | 18379011 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Ependymoma | 16718352 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16272173 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 17133270 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Prostate cancer | 16573809 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Paraganglioma | 21461997 | CNVD |
Pheochromocytoma | 21461997 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Prostate cancer | 17245344 | CNVD |
Prostate cancer | 18632612 | CNVD |
Colorectal cancer | 21586687 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Developmental delay | 21147756 | CNVD |
Melanoma | 18172304 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Merkel cell carcinoma | 19020549 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 21858162 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Gastric cancer | 17908304 | CNVD |
Glioblastoma multiforme | 21750150 | CNVD |
Breast cancer | 17603634 | CNVD |
Cancer | 21183584 | CNVD |
Breast cancer | 17393978 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Liposarcoma | 21253554 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
abnormal development | 18461090 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Anaplastic thyroid cancer | 18753363 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:62642400-62643000 | Active TSS | Fetal Kidney | kidney |
2 | chr13:62652000-62652400 | Active TSS | Fetal Brain Male | brain |