Variant report

Variant	rs9670976
Chromosome Location	chr13:62655236-62655237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH20-14	chr13:62655235-62655462	NONHSAT034139

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs67188235	1.00[ASN][1000 genomes]
rs7319306	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7332531	1.00[AMR][1000 genomes]
rs7996831	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7998127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900252	chr13:62502166-62687843	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900253	chr13:62515266-62660299	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900254	chr13:62549703-62660299	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900255	chr13:62549703-62680229	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900256	chr13:62569634-62660299	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv561872	chr13:62641458-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
9	esv1821989	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
10	esv1822563	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
11	esv1835325	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
12	esv1837584	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
13	esv1839175	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
14	esv1840195	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
15	esv1841571	chr13:62649010-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
16	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1824850	chr13:62652084-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
18	nsv561873	chr13:62652084-62657335	Active TSS	lncRNA	n/a	inside rSNPs	n/a
19	nsv819338	chr13:62654398-62657516	Inactive region	lncRNA	n/a	inside rSNPs	n/a
20	esv3518407	chr13:62654460-62657804	Inactive region	lncRNA	n/a	inside rSNPs	n/a
21	nsv820945	chr13:62654599-62657805	Inactive region	lncRNA	n/a	inside rSNPs	n/a
22	esv3518396	chr13:62654621-62657725	Inactive region	lncRNA	n/a	inside rSNPs	n/a
23	esv3518418	chr13:62654621-62657725	Inactive region	lncRNA	n/a	inside rSNPs	n/a
24	esv18439	chr13:62654714-62657816	Inactive region	lncRNA	n/a	inside rSNPs	n/a
25	nsv826666	chr13:62654803-62657486	Inactive region	lncRNA	n/a	inside rSNPs	n/a
26	nsv826667	chr13:62654803-62657591	Inactive region	lncRNA	n/a	inside rSNPs	n/a
27	nsv826668	chr13:62654803-62657604	Inactive region	lncRNA	n/a	inside rSNPs	n/a
28	esv14290	chr13:62654958-62658528	Inactive region	lncRNA	n/a	inside rSNPs	n/a
29	nsv826669	chr13:62655059-62657330	Inactive region	lncRNA	n/a	inside rSNPs	n/a
30	nsv561874	chr13:62655096-62657056	Inactive region	lncRNA	n/a	inside rSNPs	n/a
31	nsv561875	chr13:62655096-62657124	Inactive region	lncRNA	n/a	inside rSNPs	n/a
32	nsv561876	chr13:62655096-62657198	Inactive region	lncRNA	n/a	inside rSNPs	n/a
33	esv1815217	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
34	esv1815772	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
35	esv1816387	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
36	esv1817559	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
37	esv1817785	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
38	esv1818182	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
39	esv1819590	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
40	esv1820946	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
41	esv1822051	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
42	esv1822961	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
43	esv1823277	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
44	esv1823319	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
45	esv1823494	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
46	esv1823617	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
47	esv1823807	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
48	esv1823896	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
49	esv1833859	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a
50	esv1834282	chr13:62655096-62657335	Inactive region	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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