Variant report

Variant	nsv605018
Chromosome Location	chr6:161264604-161275892
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:
2	chr6:161271079..161273454-chr6:161275442..161277966,2	K562	blood:
3	chr6:161271079..161273700-chr6:161275442..161277966,3	K562	blood:
4	chr6:161260541..161262340-chr6:161262561..161265121,3	K562	blood:
5	chr6:161271079..161273454-chr6:161275442..161277966,2	K562	blood:
6	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:
7	chr6:161271079..161273700-chr6:161275442..161277966,3	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-3	chr6:161267549-161267600	l_3310_chr6:161267548-161283742_testes
2	lnc-PLG-3	chr6:161267391-161267600	NONHSAT115916
3	lnc-PLG-3	chr6:161268128-161268254	l_3310_chr6:161267548-161283742_testes
4	lnc-PLG-3	chr6:161268885-161269038	l_3310_chr6:161267548-161283742_testes
5	lnc-PLG-3	chr6:161268016-161268184	NONHSAT115916
6	lnc-PLG-4	chr6:161272102-161272394	NONHSAT115917

No data

Extended variants
information (count: 46 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9355842	chr6:161267442-161267443	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs575424352	chr6:161267443-161267444	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs193038882	chr6:161267457-161267458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs377219602	chr6:161267467-161267468	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs62435283	chr6:161267489-161267490	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs574400446	chr6:161267490-161267491	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs540089141	chr6:161267523-161267524	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs9365214	chr6:161267556-161267557	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs531299893	chr6:161267583-161267584	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs13208565	chr6:161268025-161268026	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs13208570	chr6:161268029-161268030	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs13208572	chr6:161268036-161268037	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs535902592	chr6:161268111-161268112	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs111574244	chr6:161268118-161268119	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs9766526	chr6:161268119-161268120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs540175837	chr6:161268120-161268121	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs9765938	chr6:161268135-161268136	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs9766533	chr6:161268200-161268201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs201525147	chr6:161268222-161268223	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs144391525	chr6:161268225-161268226	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs545501917	chr6:161268226-161268227	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551370853	chr6:161268892-161268893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs539394693	chr6:161268903-161268904	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs566661975	chr6:161268921-161268922	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs556409019	chr6:161268944-161268945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs367972207	chr6:161268945-161268946	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs575983761	chr6:161268960-161268961	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs146949554	chr6:161268963-161268964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs9355844	chr6:161268967-161268968	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs547122497	chr6:161269007-161269008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs114463931	chr6:161269015-161269016	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs564715926	chr6:161269033-161269034	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs28711930	chr6:161272157-161272158	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs562978929	chr6:161272194-161272195	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs531923431	chr6:161272219-161272220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs548773996	chr6:161272220-161272221	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs200445710	chr6:161272251-161272252	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs568787069	chr6:161272264-161272265	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs9456598	chr6:161272283-161272284	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs547480198	chr6:161272285-161272286	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs191533939	chr6:161272309-161272310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs9458048	chr6:161272317-161272318	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs556607045	chr6:161272345-161272346	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs374811867	chr6:161272368-161272369	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs547948555	chr6:161272374-161272375	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs183681988	chr6:161272383-161272384	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chordoma	18071362	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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