Variant report

Variant	rs13208565
Chromosome Location	chr6:161268025-161268026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-3	chr6:161268016-161268184	NONHSAT115916

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13208570	0.84[EUR][1000 genomes]
rs13208572	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886816	chr6:161225303-161286450	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605006	chr6:161235098-161271777	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv605007	chr6:161240841-161271777	Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv605008	chr6:161253485-161270619	Bivalent Enhancer Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv605009	chr6:161253485-161271777	ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv605010	chr6:161253485-161279478	Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv605011	chr6:161257418-161270619	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv605012	chr6:161260530-161271777	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv605013	chr6:161260530-161276965	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1834934	chr6:161260530-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv21310	chr6:161261102-161279717	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv823906	chr6:161261102-161279717	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv511315	chr6:161261261-161280932	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv820357	chr6:161261412-161279413	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv823907	chr6:161261412-161279413	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv1820897	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv1826713	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1846054	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv605014	chr6:161264604-161272765	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv605015	chr6:161264604-161273203	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv605016	chr6:161264604-161273987	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv605017	chr6:161264604-161274962	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv605018	chr6:161264604-161275892	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1813302	chr6:161264604-161276965	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv605019	chr6:161264604-161277579	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv605020	chr6:161264604-161278769	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv605021	chr6:161264604-161279478	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv605022	chr6:161264604-161279539	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	esv1810571	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	esv1834257	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv1837198	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv605023	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv605024	chr6:161267335-161273203	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv605025	chr6:161267335-161277918	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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