Variant report

Variant	rs200445710
Chromosome Location	chr6:161272251-161272252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161266955..161270556-chr6:161271678..161274838,4	K562	blood:
2	chr6:161271079..161273454-chr6:161275442..161277966,2	K562	blood:
3	chr6:161271079..161273700-chr6:161275442..161277966,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-4	chr6:161272102-161272394	NONHSAT115917

Extended variants
information (count: 57 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886816	chr6:161225303-161286450	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605010	chr6:161253485-161279478	Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv605013	chr6:161260530-161276965	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1834934	chr6:161260530-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv21310	chr6:161261102-161279717	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv823906	chr6:161261102-161279717	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv511315	chr6:161261261-161280932	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv820357	chr6:161261412-161279413	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv823907	chr6:161261412-161279413	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1820897	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv1826713	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv1846054	chr6:161262653-161278809	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv605014	chr6:161264604-161272765	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv605015	chr6:161264604-161273203	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv605016	chr6:161264604-161273987	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv605017	chr6:161264604-161274962	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv605018	chr6:161264604-161275892	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1813302	chr6:161264604-161276965	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv605019	chr6:161264604-161277579	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv605020	chr6:161264604-161278769	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv605021	chr6:161264604-161279478	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv605022	chr6:161264604-161279539	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv1810571	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1834257	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1837198	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv605023	chr6:161264604-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv605024	chr6:161267335-161273203	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv605025	chr6:161267335-161277918	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv605026	chr6:161268255-161273987	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv605027	chr6:161268255-161274962	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv1835485	chr6:161268255-161275892	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv605028	chr6:161268255-161275892	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv605029	chr6:161268255-161277579	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv605030	chr6:161268255-161277918	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv605031	chr6:161268255-161279539	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
40	esv1835977	chr6:161268255-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
41	esv1840297	chr6:161268255-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
42	esv1841380	chr6:161268255-161279599	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
43	nsv605032	chr6:161268702-161274962	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
44	nsv605033	chr6:161268702-161275892	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
45	nsv605034	chr6:161268702-161276965	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	nsv605035	chr6:161268702-161277579	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	nsv605036	chr6:161268702-161277850	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv605037	chr6:161268702-161277918	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	nsv823909	chr6:161269047-161272898	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
50	nsv605038	chr6:161269097-161273987	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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