Variant report

Variant	nsv984081
Chromosome Location	chr15:60258069-60258798
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181306387	chr15:60258078-60258079	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs542561532	chr15:60258084-60258085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs563152180	chr15:60258120-60258121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs567291535	chr15:60258172-60258173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535008215	chr15:60258174-60258175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs185857507	chr15:60258176-60258177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs191749940	chr15:60258200-60258201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs16941981	chr15:60258204-60258205	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs557507532	chr15:60258293-60258294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs112084963	chr15:60258295-60258296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183717840	chr15:60258306-60258307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs186995164	chr15:60258320-60258321	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs573629670	chr15:60258366-60258367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs192397315	chr15:60258380-60258381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559723047	chr15:60258392-60258393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs562765385	chr15:60258430-60258431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs60668087	chr15:60258472-60258473	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs112371149	chr15:60258476-60258477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs372057900	chr15:60258477-60258478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs60450260	chr15:60258485-60258486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs191711649	chr15:60258489-60258490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs75406173	chr15:60258535-60258536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs545717246	chr15:60258564-60258565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs530926930	chr15:60258565-60258566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs549038340	chr15:60258566-60258567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs560949866	chr15:60258593-60258594	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs116019173	chr15:60258662-60258663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs368926504	chr15:60258664-60258665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs571874684	chr15:60258670-60258671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs539302326	chr15:60258690-60258691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs550908265	chr15:60258698-60258699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs569404432	chr15:60258701-60258702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs73421200	chr15:60258703-60258704	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs555459381	chr15:60258715-60258716	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs145793417	chr15:60258721-60258722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs534650446	chr15:60258735-60258736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs564894066	chr15:60258752-60258753	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs10519028	chr15:60258767-60258768	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Mental retardation	17124404	CNVD
Gastrointestinal stromal cancer	20877625	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60257800-60258400	Enhancers	Thymus	Thymus
2	chr15:60257800-60258800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:60258200-60258800	Enhancers	Primary T cells from cord blood	blood

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