Variant report

Variant	rs10519028
Chromosome Location	chr15:60258767-60258768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12439255	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12439270	0.88[ASN][1000 genomes]
rs12440475	0.89[ASN][1000 genomes]
rs1365115	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1365116	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1365117	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1365118	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1425929	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1425930	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1425931	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1582738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1582739	0.85[AMR][1000 genomes]
rs1582741	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17191127	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1863394	0.89[ASN][1000 genomes]
rs1863395	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1991251	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2059556	0.85[AMR][1000 genomes]
rs2414653	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28507628	0.88[ASN][1000 genomes]
rs4774351	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60668087	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62013081	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62013082	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62013083	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62013084	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62013085	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62013086	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62013090	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62013091	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62013092	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62013093	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62015050	0.84[ASN][1000 genomes]
rs7172033	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv984081	chr15:60258069-60258798	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60257800-60258800	Enhancers	Placenta Amnion	Placenta Amnion
2	chr15:60258200-60258800	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links