Variant report

Variant	rs2059556
Chromosome Location	chr15:60232522-60232523
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1025170	0.80[AMR][1000 genomes]
rs10519028	0.85[AMR][1000 genomes]
rs12438425	0.80[AMR][1000 genomes]
rs12439255	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12439270	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440475	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1365115	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1365116	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1365117	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1365118	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1425929	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1425930	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1425931	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582738	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1582739	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1582741	0.92[ASN][1000 genomes]
rs17191127	0.88[ASN][1000 genomes]
rs1863394	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1863395	0.88[ASN][1000 genomes]
rs1991251	0.82[AMR][1000 genomes]
rs2059554	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059555	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414653	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28507628	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4774351	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60668087	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62013081	0.92[ASN][1000 genomes]
rs62013082	0.92[ASN][1000 genomes]
rs62013083	0.92[ASN][1000 genomes]
rs62013084	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62013085	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62013086	0.90[ASN][1000 genomes]
rs62013090	0.80[ASN][1000 genomes]
rs62013091	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62013092	0.86[ASN][1000 genomes]
rs62013093	0.86[ASN][1000 genomes]
rs62015050	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7172033	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60226200-60232600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:60229200-60233000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:60229200-60233000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:60229200-60233000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:60229200-60233200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:60229400-60233000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:60229400-60233000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:60229400-60233400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:60229600-60232800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:60230200-60233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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