Variant report

Variant	rs1582739
Chromosome Location	chr15:60252450-60252451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10519028	0.85[AMR][1000 genomes]
rs12439255	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1365115	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1365116	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1365117	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1365118	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1425929	0.82[AMR][1000 genomes]
rs1425930	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1425931	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1582738	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1991251	0.87[AMR][1000 genomes]
rs2059556	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2414653	0.82[AMR][1000 genomes]
rs28507628	0.85[EUR][1000 genomes]
rs4774351	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60668087	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62013084	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62013085	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62013090	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62013091	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62015050	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60252000-60252800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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