Variant report

Variant	rs4774351
Chromosome Location	chr15:60245766-60245767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60228860..60230687-chr15:60243580..60246151,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10519028	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12439255	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439270	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440475	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1365115	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1365116	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1365117	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1365118	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1425929	0.99[ASN][1000 genomes]
rs1425930	0.90[ASN][1000 genomes]
rs1425931	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1582738	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1582739	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1582741	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17191127	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1863394	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863395	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2059554	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2059555	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2059556	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2414653	0.99[ASN][1000 genomes]
rs28507628	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60668087	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62013081	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62013082	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62013083	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62013084	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62013085	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62013086	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62013090	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62013091	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62013092	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62013093	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62015050	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172033	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60235200-60247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:60244800-60245800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr15:60245000-60246000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:60245000-60246000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60245200-60245800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:60245200-60245800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr15:60245200-60246000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:60245200-60246000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:60245200-60246200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:60245400-60245800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:60245400-60245800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:60245400-60245800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:60245400-60245800	Enhancers	Fetal Intestine Small	intestine
14	chr15:60245400-60245800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:60245400-60246000	Enhancers	Pancreas	Pancrea
16	chr15:60245600-60245800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:60245600-60245800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr15:60245600-60245800	Flanking Active TSS	Hela-S3	cervix
19	chr15:60245600-60246000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:60245600-60246000	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr15:60245600-60246200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:60245600-60246200	Enhancers	Liver	Liver

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