Variant report

Variant	rs73421200
Chromosome Location	chr15:60258703-60258704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10519029	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16941961	0.94[EUR][1000 genomes]
rs16941975	0.94[EUR][1000 genomes]
rs55676147	0.86[EUR][1000 genomes]
rs73421141	0.94[EUR][1000 genomes]
rs73421164	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421183	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421184	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421196	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv984081	chr15:60258069-60258798	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60257800-60258800	Enhancers	Placenta Amnion	Placenta Amnion
2	chr15:60258200-60258800	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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