Variant report

Variant	rs10519029
Chromosome Location	chr15:60236939-60236940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16941961	1.00[EUR][1000 genomes]
rs16941975	1.00[EUR][1000 genomes]
rs55676147	0.92[EUR][1000 genomes]
rs73421141	1.00[EUR][1000 genomes]
rs73421164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421183	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421184	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421196	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421200	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60234400-60237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:60234400-60237400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:60234600-60237600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:60234600-60238600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:60235200-60247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:60235400-60238800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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