Variant report

Variant	rs16941975
Chromosome Location	chr15:60245758-60245759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60228860..60230687-chr15:60243580..60246151,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10519029	1.00[EUR][1000 genomes]
rs16941961	1.00[EUR][1000 genomes]
rs55676147	0.92[EUR][1000 genomes]
rs62013082	0.84[AFR][1000 genomes]
rs62013083	0.84[AFR][1000 genomes]
rs73421141	1.00[EUR][1000 genomes]
rs73421164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73421183	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73421184	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73421196	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73421200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60235200-60247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:60244800-60245800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr15:60245000-60246000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:60245000-60246000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60245200-60245800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:60245200-60245800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr15:60245200-60246000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:60245200-60246000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:60245200-60246200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:60245400-60245800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:60245400-60245800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:60245400-60245800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:60245400-60245800	Enhancers	Fetal Intestine Small	intestine
14	chr15:60245400-60245800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:60245400-60246000	Enhancers	Pancreas	Pancrea
16	chr15:60245600-60245800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:60245600-60245800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr15:60245600-60245800	Flanking Active TSS	Hela-S3	cervix
19	chr15:60245600-60246000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:60245600-60246000	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr15:60245600-60246200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:60245600-60246200	Enhancers	Liver	Liver

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