Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10004343	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10010020	0.81[EUR][1000 genomes]
rs10016149	0.94[EUR][1000 genomes]
rs10018944	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11100239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11100241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13127861	0.83[EUR][1000 genomes]
rs13131239	0.94[EUR][1000 genomes]
rs13137560	0.94[EUR][1000 genomes]
rs13138304	0.94[EUR][1000 genomes]
rs1502739	0.83[EUR][1000 genomes]
rs17038494	0.91[EUR][1000 genomes]
rs17038535	0.81[EUR][1000 genomes]
rs28421527	0.91[EUR][1000 genomes]
rs28580548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28588671	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28612530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28739558	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34839518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35204314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388242	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35590229	0.91[EUR][1000 genomes]
rs35648852	0.82[EUR][1000 genomes]
rs35740475	0.91[EUR][1000 genomes]
rs35771910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67560904	0.94[EUR][1000 genomes]
rs68184589	0.91[EUR][1000 genomes]
rs71609048	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160479600-160506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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