Variant report

Variant	rs13127861
Chromosome Location	chr4:160521314-160521315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000928	0.83[EUR][1000 genomes]
rs10004343	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10010020	0.97[EUR][1000 genomes]
rs10016149	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10018944	0.83[EUR][1000 genomes]
rs11100239	0.83[EUR][1000 genomes]
rs11100241	0.83[EUR][1000 genomes]
rs13131239	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13137560	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13138304	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1502739	1.00[EUR][1000 genomes]
rs17038494	0.91[EUR][1000 genomes]
rs17038535	0.97[EUR][1000 genomes]
rs28421527	0.91[EUR][1000 genomes]
rs28580548	0.83[EUR][1000 genomes]
rs28588671	0.83[EUR][1000 genomes]
rs28612530	0.83[EUR][1000 genomes]
rs28688135	0.83[EUR][1000 genomes]
rs28739558	0.80[EUR][1000 genomes]
rs34839518	0.83[EUR][1000 genomes]
rs35204314	0.83[EUR][1000 genomes]
rs35388242	0.83[EUR][1000 genomes]
rs35590229	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35648852	1.00[AMR][1000 genomes]
rs35740475	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35771910	0.83[EUR][1000 genomes]
rs67560904	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68184589	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71609048	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160516200-160526800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:160516800-160530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:160519200-160521400	Active TSS	Fetal Kidney	kidney
5	chr4:160519600-160527600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:160519600-160528200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:160520000-160525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:160520000-160527000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:160520400-160522000	Enhancers	Fetal Intestine Small	intestine
10	chr4:160520400-160526800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:160521200-160524200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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