Variant report

Variant	rs71609048
Chromosome Location	chr4:160473547-160473548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000928	0.91[EUR][1000 genomes]
rs10004343	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10010020	0.83[EUR][1000 genomes]
rs10016149	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10018944	0.91[EUR][1000 genomes]
rs11100239	0.91[EUR][1000 genomes]
rs11100241	0.91[EUR][1000 genomes]
rs13127861	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13131239	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13137560	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13138304	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1502739	0.86[EUR][1000 genomes]
rs17038494	0.94[EUR][1000 genomes]
rs17038535	0.83[EUR][1000 genomes]
rs28421527	0.94[EUR][1000 genomes]
rs28580548	0.91[EUR][1000 genomes]
rs28588671	0.91[EUR][1000 genomes]
rs28612530	0.91[EUR][1000 genomes]
rs28688135	0.91[EUR][1000 genomes]
rs28739558	0.88[EUR][1000 genomes]
rs34839518	0.91[EUR][1000 genomes]
rs35204314	0.91[EUR][1000 genomes]
rs35388242	0.91[EUR][1000 genomes]
rs35590229	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35648852	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35740475	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35771910	0.91[EUR][1000 genomes]
rs67560904	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68184589	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160468600-160473800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:160470600-160478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160472400-160474200	Weak transcription	Pancreas	Pancrea
4	chr4:160473000-160476600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:160473400-160473600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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