Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10002756	0.85[ASN][1000 genomes]
rs10009048	0.81[CEU][hapmap]
rs10020432	0.85[ASN][1000 genomes]
rs10031441	0.86[ASN][1000 genomes]
rs10938078	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs10938079	0.94[ASW][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.88[YRI][hapmap]
rs11733262	0.94[ASW][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.88[YRI][hapmap]
rs12500723	0.85[ASN][1000 genomes]
rs12504308	0.84[ASN][1000 genomes]
rs12506899	0.85[ASN][1000 genomes]
rs12510174	0.87[ASN][1000 genomes]
rs13124940	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs13150293	0.83[ASN][1000 genomes]
rs1358592	0.90[JPT][hapmap]
rs16849461	0.95[JPT][hapmap]
rs16849508	0.90[JPT][hapmap]
rs1997332	0.95[JPT][hapmap];0.81[YRI][hapmap]
rs4235119	0.95[JPT][hapmap];0.88[YRI][hapmap]
rs4267703	0.95[JPT][hapmap]
rs6446937	0.95[JPT][hapmap]
rs6446938	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs6852149	0.95[JPT][hapmap]
rs6852772	0.90[JPT][hapmap]
rs737241	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10001225	ALB	cis	parietal	SCAN
rs10001225	BTC	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74319600-74324400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:74322800-74324400	Weak transcription	Fetal Intestine Small	intestine
3	chr4:74322800-74328000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:74323600-74324400	Enhancers	HepG2	liver

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