Variant report

Variant	rs10005364
Chromosome Location	chr4:96372673-96372674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10012238	1.00[AMR][1000 genomes]
rs28449314	1.00[AMR][1000 genomes]
rs28552550	1.00[AMR][1000 genomes]
rs28655535	1.00[AMR][1000 genomes]
rs73842316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv523039	chr4:96361153-96401647	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96350800-96384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96358800-96374000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:96361000-96373000	Weak transcription	Fetal Stomach	stomach
4	chr4:96361400-96394200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:96361800-96378000	Weak transcription	Fetal Kidney	kidney
6	chr4:96364400-96373400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:96367000-96373400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:96367800-96378600	Weak transcription	Fetal Lung	lung
9	chr4:96371200-96372800	Enhancers	Brain Hippocampus Middle	brain
10	chr4:96371600-96374800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:96371600-96375600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:96371800-96373400	Weak transcription	Brain Angular Gyrus	brain
13	chr4:96372200-96374800	Weak transcription	Brain Substantia Nigra	brain
14	chr4:96372400-96373400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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