Variant report

Variant	rs28655535
Chromosome Location	chr4:96426450-96426451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10005364	1.00[AMR][1000 genomes]
rs10012238	1.00[AMR][1000 genomes]
rs28449314	1.00[AMR][1000 genomes]
rs28552550	1.00[AMR][1000 genomes]
rs73842316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96420800-96437600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96421000-96436800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:96421600-96436600	Weak transcription	Fetal Stomach	stomach
4	chr4:96421800-96426800	Weak transcription	Brain Anterior Caudate	brain
5	chr4:96422000-96427600	Weak transcription	Fetal Lung	lung
6	chr4:96422400-96426600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96425200-96427600	Enhancers	Brain Substantia Nigra	brain
8	chr4:96425200-96429200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:96425200-96430600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:96425200-96430800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:96425400-96428200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:96425400-96428600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:96425400-96430600	Enhancers	NH-A	brain
14	chr4:96425600-96426600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:96425600-96427000	Weak transcription	Brain Angular Gyrus	brain
16	chr4:96425600-96427000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:96425800-96426600	Enhancers	Brain Germinal Matrix	brain
18	chr4:96425800-96429600	Enhancers	HSMM	muscle
19	chr4:96426000-96426800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:96426000-96429800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:96426200-96427600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:96426200-96427800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:96426200-96427800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:96426200-96428400	Enhancers	HUVEC	blood vessel
25	chr4:96426200-96428800	Enhancers	Brain Hippocampus Middle	brain
26	chr4:96426200-96430000	Enhancers	HMEC	breast
27	chr4:96426200-96430200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr4:96426200-96430200	Enhancers	Osteobl	bone
29	chr4:96426400-96426600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:96426400-96427800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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