Variant report

Variant	rs73842316
Chromosome Location	chr4:96433424-96433425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10005364	1.00[AMR][1000 genomes]
rs10012238	1.00[AMR][1000 genomes]
rs28449314	1.00[AMR][1000 genomes]
rs28552550	1.00[AMR][1000 genomes]
rs28655535	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96420800-96437600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96421000-96436800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:96421600-96436600	Weak transcription	Fetal Stomach	stomach
4	chr4:96427600-96436800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:96432200-96434400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:96432400-96437600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:96432800-96433600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:96432800-96437800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:96432800-96449400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:96432800-96449400	Weak transcription	Fetal Kidney	kidney
11	chr4:96433000-96443400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:96433000-96444000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:96433200-96433600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:96433200-96433600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:96433200-96433800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:96433200-96434200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:96433200-96437600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:96433400-96433800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:96433400-96434400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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