Variant report

Variant	rs10005465
Chromosome Location	chr4:22691056-22691057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10004988	0.96[AFR][1000 genomes]
rs10012430	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873082	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16873087	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28495267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533002	0.96[AFR][1000 genomes]
rs28561837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55689327	0.93[EUR][1000 genomes]
rs56221574	0.97[EUR][1000 genomes]
rs56398718	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59785842	0.93[EUR][1000 genomes]
rs61069572	0.90[EUR][1000 genomes]
rs6820211	0.90[EUR][1000 genomes]
rs6841197	0.93[EUR][1000 genomes]
rs73106153	0.90[EUR][1000 genomes]
rs73106159	0.93[EUR][1000 genomes]
rs9991992	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22682200-22694600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:22682400-22692200	Weak transcription	Liver	Liver
3	chr4:22685200-22693600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:22686200-22692600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:22690000-22691400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:22690800-22691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:22690800-22691200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:22690800-22691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:22690800-22691400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:22690800-22692800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:22691000-22691400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:22691000-22691400	Enhancers	Fetal Thymus	thymus
13	chr4:22691000-22691600	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:22691000-22692600	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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