Variant report

Variant	rs6820211
Chromosome Location	chr4:22670115-22670116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10005465	0.90[EUR][1000 genomes]
rs10012430	0.90[EUR][1000 genomes]
rs1564931	1.00[CHB][hapmap]
rs28495267	0.90[EUR][1000 genomes]
rs28561837	0.90[EUR][1000 genomes]
rs55689327	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56221574	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398718	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59785842	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61069572	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6841197	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73106159	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:22668000-22670800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:22669000-22670400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:22669000-22670400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:22669000-22670600	Enhancers	Adipose Nuclei	Adipose
6	chr4:22669200-22670400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:22669200-22670800	Enhancers	Liver	Liver
8	chr4:22669200-22671600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:22669200-22673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:22669400-22670200	Weak transcription	HSMMtube	muscle
11	chr4:22669400-22670600	Weak transcription	Placenta	Placenta
12	chr4:22669400-22670600	Enhancers	Osteobl	bone
13	chr4:22669400-22672600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:22669600-22670400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:22669800-22670200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:22669800-22670200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr4:22669800-22670600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:22669800-22671800	Enhancers	Primary B cells from cord blood	blood
19	chr4:22670000-22670400	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr4:22670000-22670400	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr4:22670000-22670400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:22670000-22670600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:22670000-22670600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:22670000-22670600	Enhancers	Fetal Intestine Small	intestine
25	chr4:22670000-22670600	Enhancers	Fetal Lung	lung
26	chr4:22670000-22670600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr4:22670000-22670800	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr4:22670000-22671200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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